# HG changeset patch
# User iuc
# Date 1725873043 0
# Node ID 3843a30053ee91a35e83f47e70e076b427cddc44
# Parent c8ba8286e7c092e630b598313baf1c781a4b2c5c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 79c3c1123428c177bf4a8c38260232810457845d
diff -r c8ba8286e7c0 -r 3843a30053ee clair3.xml
--- a/clair3.xml Tue Jul 30 14:23:36 2024 +0000
+++ b/clair3.xml Mon Sep 09 09:10:43 2024 +0000
@@ -2,7 +2,7 @@
germline small variant caller for long-reads
1.0.8
- 0
+ 1
clair3
diff -r c8ba8286e7c0 -r 3843a30053ee test-data/all_fasta.loc
--- a/test-data/all_fasta.loc Tue Jul 30 14:23:36 2024 +0000
+++ b/test-data/all_fasta.loc Mon Sep 09 09:10:43 2024 +0000
@@ -4,7 +4,7 @@
#all_fasta.loc. This file has the format (white space characters are
#TAB characters):
#
-#
+#
#
#So, all_fasta.loc could look something like this:
-test1 "Test Genome" ${__HERE__}/test1.fasta
+test1 test1 "Test Genome" ${__HERE__}/test1.fasta
diff -r c8ba8286e7c0 -r 3843a30053ee tool-data/all_fasta.loc.sample
--- a/tool-data/all_fasta.loc.sample Tue Jul 30 14:23:36 2024 +0000
+++ b/tool-data/all_fasta.loc.sample Mon Sep 09 09:10:43 2024 +0000
@@ -4,7 +4,7 @@
#all_fasta.loc. This file has the format (white space characters are
#TAB characters):
#
-#
+#
#
#So, all_fasta.loc could look something like this:
-#test1 Test-Genome ./test-data/test1.fa
+#test1 test1 Test-Genome ./test-data/test1.fa
diff -r c8ba8286e7c0 -r 3843a30053ee tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample Tue Jul 30 14:23:36 2024 +0000
+++ b/tool_data_table_conf.xml.sample Mon Sep 09 09:10:43 2024 +0000
@@ -6,7 +6,7 @@
- value, name, path
+ value, dbkey, name, path
diff -r c8ba8286e7c0 -r 3843a30053ee tool_data_table_conf.xml.test
--- a/tool_data_table_conf.xml.test Tue Jul 30 14:23:36 2024 +0000
+++ b/tool_data_table_conf.xml.test Mon Sep 09 09:10:43 2024 +0000
@@ -7,7 +7,7 @@
- value, name, path
+ value, dbkey, name, path