Mercurial > repos > iuc > cnv_vcf2json

comparison cnv-vcf2json.xml @ 1:7d2d2e3b9891 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnv-vcf2json commit 7b5c842d3c006d2afd00aff1ef833f236a45dd3d
author iuc
date Wed, 24 Jul 2024 12:56:03 +0000
parents c8caf812d33b
children
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0:c8caf812d33b 1:7d2d2e3b9891
19 <data name="output_json" format="json" label="${tool.name} on ${on_string}: CNV JSON File" from_work_dir="output.json" /> 19 <data name="output_json" format="json" label="${tool.name} on ${on_string}: CNV JSON File" from_work_dir="output.json" />
20 </outputs> 20 </outputs>
21 <tests> 21 <tests>
22 <test expect_num_outputs="1"> 22 <test expect_num_outputs="1">
23 <param name="input_vcf_file" ftype="vcf" value="HG00096.cnv.vcf" /> 23 <param name="input_vcf_file" ftype="vcf" value="HG00096.cnv.vcf" />
24 <output name="output_json" file="output.json" /> 24 <output name="output_json" file="output.json" ftype="json" compare="sim_size" >
25 <assert_contents><has_size value="356000" delta="20000" /></assert_contents>
26 </output>
25 </test> 27 </test>
26 </tests> 28 </tests>
27 <help><![CDATA[ 29 <help><![CDATA[
28 The tool converts the structural variants VCF file into JSON file as a preprocessing step to import the data into Beacon2 MongoDB protocol 30 The tool converts the structural variants VCF file into JSON file as a preprocessing step to import the data into Beacon2 MongoDB protocol
29 ]]></help> 31 ]]></help>