Mercurial > repos > iuc > cnv_vcf2json
diff test-data/output.json @ 1:7d2d2e3b9891 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnv-vcf2json commit 7b5c842d3c006d2afd00aff1ef833f236a45dd3d
| author | iuc |
|---|---|
| date | Wed, 24 Jul 2024 12:56:03 +0000 |
| parents | c8caf812d33b |
| children |
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--- a/test-data/output.json Fri Mar 01 07:19:35 2024 +0000 +++ b/test-data/output.json Wed Jul 24 12:56:03 2024 +0000 @@ -3,8865 +3,13002 @@ "biosampleId": "HG00096", "assemblyId": "GRCh38", "variantInternalId": "chr1:2650427-2651463:EFO:0030069", - "variantType": "DEL", - "variantId": "EFO:0030069", - "start": 2650427, - "end": 2651463, - "referenceName": "1", + "variantState": { + "id": "EFO:0030069", + "label": "complete genomic loss" + }, + "definitions": { + "Location": { + "start": 2650427, + "end": 2651463, + "chromosome": "1" + } + }, "info": { "legacyId": "DRAGEN:LOSS:chr1:2650428-2651463", "cnCount": 0, "cnValue": 1.00369e-09 - } + }, + "updated": "2024-07-24T09:24:38.692461" }, { "biosampleId": "HG00096", "assemblyId": "GRCh38", "variantInternalId": "chr1:2651463-2653075:EFO:0030068", - "variantType": "DEL", - "variantId": "EFO:0030068", - "start": 2651463, - "end": 2653075, - "referenceName": "1", + "variantState": { + "id": "EFO:0030068", + "label": "low-level loss" + }, + "definitions": { + "Location": { + "start": 2651463, + "end": 2653075, + "chromosome": "1" + } + }, "info": { "legacyId": "DRAGEN:LOSS:chr1:2651464-2653075", "cnCount": 1, "cnValue": 0.395524 - 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