Mercurial > repos > iuc > cnv_vcf2json
changeset 2:2691b8c12947 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnv-vcf2json commit fc1282ec68b346988203ead860e9b9d6a47e9efb
| author | iuc |
|---|---|
| date | Sat, 01 Mar 2025 11:57:27 +0000 |
| parents | 7d2d2e3b9891 |
| children | |
| files | cnv-vcf2json.xml macros.xml test-data/HG00096.cnv.vcf test-data/input.vcf test-data/output.json |
| diffstat | 5 files changed, 755 insertions(+), 13189 deletions(-) [+] |
line wrap: on
line diff
--- a/cnv-vcf2json.xml Wed Jul 24 12:56:03 2024 +0000 +++ b/cnv-vcf2json.xml Sat Mar 01 11:57:27 2025 +0000 @@ -1,5 +1,5 @@ <tool id="cnv_vcf2json" name="CNV VCF2JSON" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05"> - <description>Converts 1000hg structural variants VCF file to JSON</description> + <description>Converts the CNVkit structural variants VCF file to JSON</description> <macros> <import>macros.xml</import> </macros> @@ -9,25 +9,66 @@ #import re ln -s '$input_vcf_file' ./input.vcf && cnv-vcf2json - -i ./input.vcf + ./input.vcf + #if $advanced_settings.assembly + --assembly '$advanced_settings.assembly' + #end if + #if $advanced_settings.analysis + --analysis '$advanced_settings.analysis' + #end if + #if $advanced_settings.individual + --individual '$advanced_settings.individual' + #end if + #if $advanced_settings.sequence + --sequence '$advanced_settings.sequence' + #end if + #if $advanced_settings.reference + --reference '$advanced_settings.reference' + #end if + #if $advanced_settings.fusion + --fusion '$advanced_settings.fusion' + #end if -o output.json ]]></command> <inputs> - <param name="input_vcf_file" type="data" format="vcf" label="CNV VCF file" help="" /> + <param name="input_vcf_file" type="data" format="vcf" label="CNVkit VCF file" help="The file Generated from CNVkit Export" /> + <section name="advanced_settings" title="Advanced settings" expanded="false"> + <param argument="--assembly" type="text" optional="true" label="Assembly Identifier" help="For example: GRCh37" > + <validator type="regex">^[0-9a-zA-Z_ .-]+$</validator> + </param> + <param argument="--analysis" type="text" optional="true" label="Analysis Identifier" help="" > + <validator type="regex">^[0-9a-zA-Z_,: .-]+$</validator> + </param> + <param argument="--individual" type="text" optional="true" label="Individual Identifier" help="" > + <validator type="regex">^[0-9a-zA-Z_,: .-]+$</validator> + </param> + <param argument="--sequence" type="text" optional="true" label="Variant Sequence" help="" > + <validator type="regex">^[0-9a-zA-Z_,: .-]+$</validator> + </param> + <param argument="--reference" type="text" optional="true" label="Reference Sequence" help="" > + <validator type="regex">^[0-9a-zA-Z_,: .-]+$</validator> + </param> + <param argument="--fusion" type="text" optional="true" label="Fusion Identifier" help="" > + <validator type="regex">^[0-9a-zA-Z_,: .-]+$</validator> + </param> + </section> </inputs> <outputs> <data name="output_json" format="json" label="${tool.name} on ${on_string}: CNV JSON File" from_work_dir="output.json" /> </outputs> <tests> <test expect_num_outputs="1"> - <param name="input_vcf_file" ftype="vcf" value="HG00096.cnv.vcf" /> - <output name="output_json" file="output.json" ftype="json" compare="sim_size" > - <assert_contents><has_size value="356000" delta="20000" /></assert_contents> + <param name="input_vcf_file" ftype="vcf" value="input.vcf" /> + <param name="assembly" value="GRCh37" /> + <output name="output_json"> + <assert_contents> + <has_json_property_with_text property="biosampleId" text="SampleID" /> + </assert_contents> </output> </test> </tests> <help><![CDATA[ - The tool converts the structural variants VCF file into JSON file as a preprocessing step to import the data into Beacon2 MongoDB protocol + The tool converts the structural variants VCF file generated from the CNVkit export subcommand into JSON file as a preprocessing step to import the data into Beacon2 MongoDB protocol ]]></help> <expand macro="citations"/> </tool>
--- a/macros.xml Wed Jul 24 12:56:03 2024 +0000 +++ b/macros.xml Sat Mar 01 11:57:27 2025 +0000 @@ -1,6 +1,6 @@ <macros> - <token name="@VERSION_SUFFIX@">0.1</token> - <token name="@TOOL_VERSION@">1.1.0</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@TOOL_VERSION@">2.0.0</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">cnv-vcf2json</requirement> @@ -19,7 +19,7 @@ author = {Khaled Jum'ah}, title = {{cnv-vcf2json}: Convert VCF Files to JSON Format}, year = {2024}, - version = {1.0.4}, + version = {2.0.0}, url = {https://pypi.org/project/cnv-vcf2json/},}</citation> </citations> </xml>
--- a/test-data/HG00096.cnv.vcf Wed Jul 24 12:56:03 2024 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,637 +0,0 @@ -##fileformat=VCFv4.2 -##ALT=<ID=CNV,Description="Copy number variant region"> -##ALT=<ID=DEL,Description="Deletion relative to the reference"> -##ALT=<ID=DUP,Description="Region of elevated copy number relative to the reference"> -##contig=<ID=chr1,length=248956422> -##contig=<ID=chr2,length=242193529> -##contig=<ID=chr3,length=198295559> -##contig=<ID=chr4,length=190214555> -##contig=<ID=chr5,length=181538259> -##contig=<ID=chr6,length=170805979> -##contig=<ID=chr7,length=159345973> -##contig=<ID=chr8,length=145138636> -##contig=<ID=chr9,length=138394717> -##contig=<ID=chr10,length=133797422> -##contig=<ID=chr11,length=135086622> -##contig=<ID=chr12,length=133275309> -##contig=<ID=chr13,length=114364328> -##contig=<ID=chr14,length=107043718> -##contig=<ID=chr15,length=101991189> -##contig=<ID=chr16,length=90338345> -##contig=<ID=chr17,length=83257441> -##contig=<ID=chr18,length=80373285> -##contig=<ID=chr19,length=58617616> -##contig=<ID=chr20,length=64444167> -##contig=<ID=chr21,length=46709983> -##contig=<ID=chr22,length=50818468> -##contig=<ID=chrX,length=156040895> -##contig=<ID=chrY,length=57227415> -##reference=file:///ephemeral/reference/index -##INFO=<ID=REFLEN,Number=1,Type=Integer,Description="Number of REF positions included in this record"> -##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant"> -##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record"> -##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS"> -##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END"> -##FILTER=<ID=cnvLength,Description="CNV with length below 10000"> -##FILTER=<ID=cnvQual,Description="CNV with quality below 10"> -##FILTER=<ID=cnvBinSupportRatio,Description="CNV with low supporting number of bins with respect to event length"> -##FILTER=<ID=cnvCopyRatio,Description="CNV with copy ratio within +/- 0.2 of 1.0"> -##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> -##FORMAT=<ID=SM,Number=1,Type=Float,Description="Linear copy ratio of the segment mean"> -##FORMAT=<ID=CN,Number=1,Type=Integer,Description="Estimated copy number"> -##FORMAT=<ID=BC,Number=1,Type=Integer,Description="Number of bins in the region"> -##FORMAT=<ID=PE,Number=2,Type=Integer,Description="Number of improperly paired end reads at start and stop breakpoints"> -##DRAGENCommandLine=<ID=dragen,Date="Sun Jun 14 03:04:52 UTC 2020",CommandLineOptions="--lic-instance-id-location /opt/instance-identity --ref-dir /ephemeral/reference/index --output-directory /output/HG00096 --intermediate-results-dir /ephemeral --output-file-prefix HG00096 -f --bam-input /mount/bams/HG00096.bam --enable-cnv true --cnv-enable-self-normalization True --enable-map-align True --enable-map-align-output true --output-format BAM --enable-duplicate-marking True --repeat-genotype-enable true --autodetect-reference-validate true --enable-variant-caller true --vc-emit-ref-confidence GVCF --vc-enable-roh True --vc-enable-vcf-output True --enable-sv true --sample-sex male --lic-server https://XXXXXXXXXXXX:YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY@license.edicogenome.com"> -##DRAGENVersion=<ID=dragen,Version="SW: 05.021.510.3.5.7b, HW: 05.021.510"> -#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00096 -chr1 2650427 DRAGEN:LOSS:chr1:2650428-2651463 N <DEL> 48 cnvLength SVTYPE=CNV;END=2651463;REFLEN=1036 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:51,519 -chr1 2651463 DRAGEN:LOSS:chr1:2651464-2653075 N <DEL> 24 cnvLength SVTYPE=CNV;END=2653075;REFLEN=1612 GT:SM:CN:BC:PE 0/1:0.395524:1:1:519,492 -chr1 4063594 DRAGEN:LOSS:chr1:4063595-4067475 N <DEL> 30 cnvLength SVTYPE=CNV;END=4067475;REFLEN=3881 GT:SM:CN:BC:PE 0/1:0.429788:1:3:9,24 -chr1 6377770 DRAGEN:LOSS:chr1:6377771-6385660 N <DEL> 27 cnvLength SVTYPE=CNV;END=6385660;REFLEN=7890 GT:SM:CN:BC:PE 0/1:0.543097:1:6:24,17 -chr1 8143311 DRAGEN:GAIN:chr1:8143312-8150440 N <DUP> 22 cnvLength SVTYPE=CNV;END=8150440;REFLEN=7129 GT:SM:CN:BC:PE ./1:1.42495:3:6:24,31 -chr1 13224579 DRAGEN:GAIN:chr1:13224580-13242034 N <DUP> 35 PASS SVTYPE=CNV;END=13242034;REFLEN=17455 GT:SM:CN:BC:PE ./1:1.49181:3:7:11,11 -chr1 16605061 DRAGEN:GAIN:chr1:16605062-16646293 N <DUP> 136 PASS SVTYPE=CNV;END=16646293;REFLEN=41232 GT:SM:CN:BC:PE ./1:3.3289:7:23:6,4 -chr1 16716711 DRAGEN:GAIN:chr1:16716712-16728256 N <DUP> 99 PASS SVTYPE=CNV;END=16728256;REFLEN=11545 GT:SM:CN:BC:PE ./1:2.68822:5:9:2,28 -chr1 16879751 DRAGEN:GAIN:chr1:16879752-16950196 N <DUP> 53 PASS SVTYPE=CNV;END=16950196;REFLEN=70445 GT:SM:CN:BC:PE ./1:1.53152:3:40:8,18 -chr1 34636777 DRAGEN:LOSS:chr1:34636778-34646300 N <DEL> 33 cnvLength SVTYPE=CNV;END=34646300;REFLEN=9523 GT:SM:CN:BC:PE 0/1:0.495288:1:9:1,32 -chr1 36957723 DRAGEN:LOSS:chr1:36957724-36960386 N <DEL> 25 cnvLength SVTYPE=CNV;END=36960386;REFLEN=2663 GT:SM:CN:BC:PE 0/1:0.479029:1:2:38,27 -chr1 43593157 DRAGEN:LOSS:chr1:43593158-43594353 N <DEL> 23 cnvLength SVTYPE=CNV;END=43594353;REFLEN=1196 GT:SM:CN:BC:PE 0/1:0.289679:1:1:168,178 -chr1 58278107 DRAGEN:LOSS:chr1:58278108-58279217 N <DEL> 36 cnvLength SVTYPE=CNV;END=58279217;REFLEN=1110 GT:SM:CN:BC:PE 1/1:0.0937719:0:1:75,55 -chr1 61647700 DRAGEN:LOSS:chr1:61647701-61655464 N <DEL> 29 cnvLength SVTYPE=CNV;END=61655464;REFLEN=7764 GT:SM:CN:BC:PE 0/1:0.52381:1:7:20,11 -chr1 62188614 DRAGEN:LOSS:chr1:62188615-62191346 N <DEL> 25 cnvLength SVTYPE=CNV;END=62191346;REFLEN=2732 GT:SM:CN:BC:PE 0/1:0.483858:1:2:41,21 -chr1 67542030 DRAGEN:LOSS:chr1:67542031-67543275 N <DEL> 47 cnvLength SVTYPE=CNV;END=67543275;REFLEN=1245 GT:SM:CN:BC:PE 1/1:0.0312573:0:1:62,66 -chr1 72289205 DRAGEN:LOSS:chr1:72289206-72345923 N <DEL> 51 PASS SVTYPE=CNV;END=72345923;REFLEN=56718 GT:SM:CN:BC:PE 0/1:0.486641:1:52:44,24 -chr1 78183859 DRAGEN:LOSS:chr1:78183860-78192785 N <DEL> 34 cnvLength SVTYPE=CNV;END=78192785;REFLEN=8926 GT:SM:CN:BC:PE 0/1:0.482922:1:3:25,4 -chr1 89010497 DRAGEN:LOSS:chr1:89010498-89012783 N <DEL> 56 cnvLength SVTYPE=CNV;END=89012783;REFLEN=2286 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:2:42,44 -chr1 103362730 DRAGEN:LOSS:chr1:103362731-103365638 N <DEL> 29 cnvLength SVTYPE=CNV;END=103365638;REFLEN=2908 GT:SM:CN:BC:PE 0/1:0.320331:1:2:1,14 -chr1 105472899 DRAGEN:LOSS:chr1:105472900-105480377 N <DEL> 34 cnvLength SVTYPE=CNV;END=105480377;REFLEN=7478 GT:SM:CN:BC:PE 0/1:0.450727:1:7:25,22 -chr1 109644578 DRAGEN:LOSS:chr1:109644579-109647981 N <DEL> 61 cnvLength SVTYPE=CNV;END=109647981;REFLEN=3403 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:3:40,54 -chr1 109647981 DRAGEN:LOSS:chr1:109647982-109650349 N <DEL> 16 cnvLength SVTYPE=CNV;END=109650349;REFLEN=2368 GT:SM:CN:BC:PE 0/1:0.587163:1:2:54,3 -chr1 109687569 DRAGEN:LOSS:chr1:109687570-109697444 N <DEL> 73 cnvLength SVTYPE=CNV;END=109697444;REFLEN=9875 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:5:0,0 -chr1 112148880 DRAGEN:LOSS:chr1:112148881-112161897 N <DEL> 76 PASS SVTYPE=CNV;END=112161897;REFLEN=13017 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:6:40,44 -chr1 125073511 DRAGEN:GAIN:chr1:125073512-125084673 N <DUP> 85 PASS SVTYPE=CNV;END=125084673;REFLEN=11162 GT:SM:CN:BC:PE ./1:2.35809:5:4:132,265 -chr1 125084673 DRAGEN:GAIN:chr1:125084674-125170990 N <DUP> 3 cnvQual SVTYPE=CNV;END=125170990;REFLEN=86317 GT:SM:CN:BC:PE ./1:1.23145:3:19:265,303 -chr1 152787112 DRAGEN:LOSS:chr1:152787113-152798062 N <DEL> 29 PASS SVTYPE=CNV;END=152798062;REFLEN=10950 GT:SM:CN:BC:PE 0/1:0.551573:1:10:7,6 -chr1 153704054 DRAGEN:LOSS:chr1:153704055-153710046 N <DEL> 22 cnvLength SVTYPE=CNV;END=153710046;REFLEN=5992 GT:SM:CN:BC:PE 0/1:0.56922:1:4:32,98 -chr1 153710046 DRAGEN:LOSS:chr1:153710047-153720849 N <DEL> 39 PASS SVTYPE=CNV;END=153720849;REFLEN=10803 GT:SM:CN:BC:PE 1/1:0.124785:0:6:98,17 -chr1 155215381 DRAGEN:LOSS:chr1:155215382-155216788 N <DEL> 24 cnvLength SVTYPE=CNV;END=155216788;REFLEN=1407 GT:SM:CN:BC:PE 0/1:0.384402:1:1:26,29 -chr1 155216788 DRAGEN:LOSS:chr1:155216789-155223806 N <DEL> 67 cnvLength SVTYPE=CNV;END=155223806;REFLEN=7018 GT:SM:CN:BC:PE 1/1:0.0156287:0:5:29,7 -chr1 155223806 DRAGEN:LOSS:chr1:155223807-155231422 N <DEL> 35 cnvLength SVTYPE=CNV;END=155231422;REFLEN=7616 GT:SM:CN:BC:PE 0/1:0.414656:1:6:7,12 -chr1 158896863 DRAGEN:LOSS:chr1:158896864-158899865 N <DEL> 25 cnvLength SVTYPE=CNV;END=158899865;REFLEN=3002 GT:SM:CN:BC:PE 0/1:0.486641:1:3:22,16 -chr1 158991236 DRAGEN:LOSS:chr1:158991237-158997459 N <DEL> 28 cnvLength SVTYPE=CNV;END=158997459;REFLEN=6223 GT:SM:CN:BC:PE 0/1:0.515117:1:5:33,31 -chr1 159678775 DRAGEN:LOSS:chr1:159678776-159679775 N <DEL> 48 cnvLength SVTYPE=CNV;END=159679775;REFLEN=1000 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:50,73 -chr1 169257792 DRAGEN:LOSS:chr1:169257793-169273435 N <DEL> 37 PASS SVTYPE=CNV;END=169273435;REFLEN=15643 GT:SM:CN:BC:PE 0/1:0.507502:1:14:2,1 -chr1 187746960 DRAGEN:LOSS:chr1:187746961-187753279 N <DEL> 68 cnvLength SVTYPE=CNV;END=187753279;REFLEN=6319 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:6:35,39 -chr1 188569503 DRAGEN:LOSS:chr1:188569504-188571503 N <DEL> 26 cnvLength SVTYPE=CNV;END=188571503;REFLEN=2000 GT:SM:CN:BC:PE 0/1:0.407842:1:2:30,27 -chr1 199139968 DRAGEN:LOSS:chr1:199139969-199144173 N <DEL> 29 cnvLength SVTYPE=CNV;END=199144173;REFLEN=4205 GT:SM:CN:BC:PE 0/1:0.460582:1:4:31,25 -chr1 206052349 DRAGEN:GAIN:chr1:206052350-206059493 N <DUP> 64 cnvLength SVTYPE=CNV;END=206059493;REFLEN=7144 GT:SM:CN:BC:PE ./1:2.03173:4:3:16,11 -chr1 207117914 DRAGEN:LOSS:chr1:207117915-207120102 N <DEL> 26 cnvLength SVTYPE=CNV;END=207120102;REFLEN=2188 GT:SM:CN:BC:PE 0/1:0.422162:1:2:74,43 -chr1 207368388 DRAGEN:LOSS:chr1:207368389-207372031 N <DEL> 61 cnvLength SVTYPE=CNV;END=207372031;REFLEN=3643 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:3:26,23 -chr1 209903979 DRAGEN:LOSS:chr1:209903980-209905088 N <DEL> 23 cnvLength SVTYPE=CNV;END=209905088;REFLEN=1109 GT:SM:CN:BC:PE 0/1:0.346094:1:1:34,34 -chr1 209905088 DRAGEN:LOSS:chr1:209905089-209912266 N <DEL> 69 cnvLength SVTYPE=CNV;END=209912266;REFLEN=7178 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:7:34,37 -chr1 212828042 DRAGEN:LOSS:chr1:212828043-212839826 N <DEL> 29 PASS SVTYPE=CNV;END=212839826;REFLEN=11784 GT:SM:CN:BC:PE 0/1:0.554817:1:9:34,36 -chr1 222199700 DRAGEN:LOSS:chr1:222199701-222207336 N <DEL> 28 cnvLength SVTYPE=CNV;END=222207336;REFLEN=7636 GT:SM:CN:BC:PE 0/1:0.539263:1:7:31,24 -chr1 228066859 DRAGEN:LOSS:chr1:228066860-228072120 N <DEL> 23 cnvLength SVTYPE=CNV;END=228072120;REFLEN=5261 GT:SM:CN:BC:PE 0/1:0.561819:1:5:13,18 -chr1 234396664 DRAGEN:LOSS:chr1:234396665-234397668 N <DEL> 22 cnvLength SVTYPE=CNV;END=234397668;REFLEN=1004 GT:SM:CN:BC:PE 0/1:0.254353:1:1:60,76 -chr1 234776261 DRAGEN:GAIN:chr1:234776262-234784001 N <DUP> 101 cnvLength SVTYPE=CNV;END=234784001;REFLEN=7740 GT:SM:CN:BC:PE ./1:2.84606:6:7:103,7 -chr1 243618689 DRAGEN:LOSS:chr1:243618690-243620819 N <DEL> 26 cnvLength SVTYPE=CNV;END=243620819;REFLEN=2130 GT:SM:CN:BC:PE 0/1:0.422353:1:2:44,49 -chr2 1521263 DRAGEN:LOSS:chr2:1521264-1526639 N <DEL> 18 cnvLength SVTYPE=CNV;END=1526639;REFLEN=5376 GT:SM:CN:BC:PE 0/1:0.600555:1:5:4,127 -chr2 1526639 DRAGEN:GAIN:chr2:1526640-1530068 N <DUP> 7 cnvLength SVTYPE=CNV;END=1530068;REFLEN=3429 GT:SM:CN:BC:PE ./1:1.30002:3:3:127,231 -chr2 1530068 DRAGEN:LOSS:chr2:1530069-1538436 N <DEL> 34 cnvLength SVTYPE=CNV;END=1538436;REFLEN=8368 GT:SM:CN:BC:PE 0/1:0.462767:1:6:231,37 -chr2 6552853 DRAGEN:LOSS:chr2:6552854-6568025 N <DEL> 37 PASS SVTYPE=CNV;END=6568025;REFLEN=15172 GT:SM:CN:BC:PE 0/1:0.499019:1:15:7,11 -chr2 16127901 DRAGEN:LOSS:chr2:16127902-16132156 N <DEL> 4 cnvLength SVTYPE=CNV;END=16132156;REFLEN=4255 GT:SM:CN:BC:PE 0/1:0.701723:1:4:1,51 -chr2 16132156 DRAGEN:LOSS:chr2:16132157-16133351 N <DEL> 49 cnvLength SVTYPE=CNV;END=16133351;REFLEN=1195 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:51,49 -chr2 16142956 DRAGEN:LOSS:chr2:16142957-16148405 N <DEL> 33 cnvLength SVTYPE=CNV;END=16148405;REFLEN=5449 GT:SM:CN:BC:PE 0/1:0.381263:1:3:19,21 -chr2 17403773 DRAGEN:LOSS:chr2:17403774-17409523 N <DEL> 11 cnvLength SVTYPE=CNV;END=17409523;REFLEN=5750 GT:SM:CN:BC:PE 0/1:0.649776:1:5:28,22 -chr2 33539548 DRAGEN:LOSS:chr2:33539549-33543048 N <DEL> 9 cnvLength SVTYPE=CNV;END=33543048;REFLEN=3500 GT:SM:CN:BC:PE 0/1:0.659993:1:3:71,23 -chr2 34298347 DRAGEN:LOSS:chr2:34298348-34301046 N <DEL> 50 cnvLength SVTYPE=CNV;END=34301046;REFLEN=2699 GT:SM:CN:BC:PE 1/1:0.0562937:0:2:46,47 -chr2 35751659 DRAGEN:LOSS:chr2:35751660-35766737 N <DEL> 35 PASS SVTYPE=CNV;END=35766737;REFLEN=15078 GT:SM:CN:BC:PE 0/1:0.517034:1:14:1,1 -chr2 38727285 DRAGEN:GAIN:chr2:38727286-38744852 N <DUP> 41 PASS SVTYPE=CNV;END=38744852;REFLEN=17567 GT:SM:CN:BC:PE ./1:1.56503:3:14:75,23 -chr2 52522265 DRAGEN:LOSS:chr2:52522266-52557269 N <DEL> 89 PASS SVTYPE=CNV;END=52557269;REFLEN=35004 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:30:43,38 -chr2 52557269 DRAGEN:LOSS:chr2:52557270-52558269 N <DEL> 22 cnvLength SVTYPE=CNV;END=52558269;REFLEN=1000 GT:SM:CN:BC:PE 0/1:0.265607:1:1:38,45 -chr2 56427460 DRAGEN:LOSS:chr2:56427461-56428460 N <DEL> 48 cnvLength SVTYPE=CNV;END=56428460;REFLEN=1000 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:0,43 -chr2 64467431 DRAGEN:LOSS:chr2:64467432-64477781 N <DEL> 28 PASS SVTYPE=CNV;END=64477781;REFLEN=10350 GT:SM:CN:BC:PE 0/1:0.555219:1:10:23,33 -chr2 76069964 DRAGEN:LOSS:chr2:76069965-76071178 N <DEL> 22 cnvLength SVTYPE=CNV;END=76071178;REFLEN=1214 GT:SM:CN:BC:PE 0/1:0.19892:1:1:6,5 -chr2 84891585 DRAGEN:LOSS:chr2:84891586-84893731 N <DEL> 25 cnvLength SVTYPE=CNV;END=84893731;REFLEN=2146 GT:SM:CN:BC:PE 0/1:0.446769:1:2:7,19 -chr2 88832905 DRAGEN:LOSS:chr2:88832906-89004489 N <DEL> 57 PASS SVTYPE=CNV;END=89004489;REFLEN=171584 GT:SM:CN:BC:PE 0/1:0.351765:1:136:24,0 -chr2 89144122 DRAGEN:LOSS:chr2:89144123-89209966 N <DEL> 15 PASS SVTYPE=CNV;END=89209966;REFLEN=65844 GT:SM:CN:BC:PE 0/1:0.661085:1:2:2,1 -chr2 89760630 DRAGEN:GAIN:chr2:89760631-89814166 N <DUP> 78 PASS SVTYPE=CNV;END=89814166;REFLEN=53536 GT:SM:CN:BC:PE ./1:1.89949:4:36:4,454 -chr2 89814166 DRAGEN:LOSS:chr2:89814167-89817903 N <DEL> 25 cnvLength SVTYPE=CNV;END=89817903;REFLEN=3737 GT:SM:CN:BC:PE 0/1:0.515117:1:3:454,268 -chr2 89817903 DRAGEN:GAIN:chr2:89817904-89851409 N <DUP> 77 PASS SVTYPE=CNV;END=89851409;REFLEN=33506 GT:SM:CN:BC:PE ./1:1.94047:4:28:268,3 -chr2 90390369 DRAGEN:GAIN:chr2:90390370-90398551 N <DUP> 150 cnvLength SVTYPE=CNV;END=90398551;REFLEN=8182 GT:SM:CN:BC:PE ./1:27.6755:55:2:404,1258 -chr2 91407826 DRAGEN:GAIN:chr2:91407827-91415876 N <DUP> 58 cnvLength SVTYPE=CNV;END=91415876;REFLEN=8050 GT:SM:CN:BC:PE ./1:1.91961:4:4:109,105 -chr2 106076541 DRAGEN:LOSS:chr2:106076542-106080702 N <DEL> 7 cnvLength SVTYPE=CNV;END=106080702;REFLEN=4161 GT:SM:CN:BC:PE 0/1:0.673357:1:4:5,14 -chr2 106261948 DRAGEN:LOSS:chr2:106261949-106268884 N <DEL> 30 cnvLength SVTYPE=CNV;END=106268884;REFLEN=6936 GT:SM:CN:BC:PE 0/1:0.502343:1:5:23,34 -chr2 122719940 DRAGEN:LOSS:chr2:122719941-122725575 N <DEL> 31 cnvLength SVTYPE=CNV;END=122725575;REFLEN=5635 GT:SM:CN:BC:PE 0/1:0.460317:1:5:37,22 -chr2 125685500 DRAGEN:LOSS:chr2:125685501-125694644 N <DEL> 34 cnvLength SVTYPE=CNV;END=125694644;REFLEN=9144 GT:SM:CN:BC:PE 0/1:0.486641:1:9:52,31 -chr2 126916599 DRAGEN:LOSS:chr2:126916600-126919599 N <DEL> 18 cnvLength SVTYPE=CNV;END=126919599;REFLEN=3000 GT:SM:CN:BC:PE 0/1:0.57826:1:3:31,28 -chr2 132242819 DRAGEN:GAIN:chr2:132242820-132247567 N <DUP> 26 cnvLength SVTYPE=CNV;END=132247567;REFLEN=4748 GT:SM:CN:BC:PE ./1:1.51316:3:3:60,32 -chr2 136345151 DRAGEN:LOSS:chr2:136345152-136347597 N <DEL> 25 cnvLength SVTYPE=CNV;END=136347597;REFLEN=2446 GT:SM:CN:BC:PE 0/1:0.467645:1:2:6,3 -chr2 146104735 DRAGEN:LOSS:chr2:146104736-146118947 N <DEL> 77 PASS SVTYPE=CNV;END=146118947;REFLEN=14212 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:14:37,49 -chr2 159102037 DRAGEN:LOSS:chr2:159102038-159105616 N <DEL> 30 cnvLength SVTYPE=CNV;END=159105616;REFLEN=3579 GT:SM:CN:BC:PE 0/1:0.336107:1:2:6,9 -chr2 161475965 DRAGEN:LOSS:chr2:161475966-161477369 N <DEL> 51 cnvLength SVTYPE=CNV;END=161477369;REFLEN=1404 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:57,50 -chr2 176400254 DRAGEN:LOSS:chr2:176400255-176401254 N <DEL> 22 cnvLength SVTYPE=CNV;END=176401254;REFLEN=1000 GT:SM:CN:BC:PE 0/1:0.291985:1:1:50,50 -chr2 176401254 DRAGEN:LOSS:chr2:176401255-176407637 N <DEL> 68 cnvLength SVTYPE=CNV;END=176407637;REFLEN=6383 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:6:50,68 -chr2 193824929 DRAGEN:LOSS:chr2:193824930-193830261 N <DEL> 66 cnvLength SVTYPE=CNV;END=193830261;REFLEN=5332 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:5:48,0 -chr2 197890596 DRAGEN:LOSS:chr2:197890597-197897093 N <DEL> 6 cnvLength SVTYPE=CNV;END=197897093;REFLEN=6497 GT:SM:CN:BC:PE 0/1:0.686603:1:6:3,28 -chr2 205249432 DRAGEN:LOSS:chr2:205249433-205256941 N <DEL> 30 cnvLength SVTYPE=CNV;END=205256941;REFLEN=7509 GT:SM:CN:BC:PE 0/1:0.515117:1:7:39,31 -chr2 205262973 DRAGEN:LOSS:chr2:205262974-205264973 N <DEL> 23 cnvLength SVTYPE=CNV;END=205264973;REFLEN=2000 GT:SM:CN:BC:PE 0/1:0.480721:1:2:25,19 -chr2 219187674 DRAGEN:LOSS:chr2:219187675-219190865 N <DEL> 60 cnvLength SVTYPE=CNV;END=219190865;REFLEN=3191 GT:SM:CN:BC:PE 1/1:4.78728e-06:0:2:113,46 -chr2 220703321 DRAGEN:LOSS:chr2:220703322-220710729 N <DEL> 3 cnvLength SVTYPE=CNV;END=220710729;REFLEN=7408 GT:SM:CN:BC:PE 0/1:0.713741:1:7:25,6 -chr2 237644761 DRAGEN:LOSS:chr2:237644762-237651120 N <DEL> 25 cnvLength SVTYPE=CNV;END=237651120;REFLEN=6359 GT:SM:CN:BC:PE 0/1:0.546854:1:6:29,38 -chr3 186614 DRAGEN:LOSS:chr3:186615-192149 N <DEL> 30 cnvLength SVTYPE=CNV;END=192149;REFLEN=5535 GT:SM:CN:BC:PE 0/1:0.474873:1:5:37,37 -chr3 6608253 DRAGEN:LOSS:chr3:6608254-6612327 N <DEL> 25 cnvLength SVTYPE=CNV;END=6612327;REFLEN=4074 GT:SM:CN:BC:PE 0/1:0.515516:1:4:22,20 -chr3 16197555 DRAGEN:LOSS:chr3:16197556-16199555 N <DEL> 26 cnvLength SVTYPE=CNV;END=16199555;REFLEN=2000 GT:SM:CN:BC:PE 0/1:0.400956:1:2:29,21 -chr3 26391521 DRAGEN:LOSS:chr3:26391522-26397904 N <DEL> 27 cnvLength SVTYPE=CNV;END=26397904;REFLEN=6383 GT:SM:CN:BC:PE 0/1:0.529576:1:6:1,3 -chr3 32059847 DRAGEN:LOSS:chr3:32059848-32066659 N <DEL> 28 cnvLength SVTYPE=CNV;END=32066659;REFLEN=6812 GT:SM:CN:BC:PE 0/1:0.523035:1:6:33,25 -chr3 49604237 DRAGEN:LOSS:chr3:49604238-49606959 N <DEL> 18 cnvLength SVTYPE=CNV;END=49606959;REFLEN=2722 GT:SM:CN:BC:PE 0/1:0.571042:1:2:19,10 -chr3 52992907 DRAGEN:LOSS:chr3:52992908-53004741 N <DEL> 33 PASS SVTYPE=CNV;END=53004741;REFLEN=11834 GT:SM:CN:BC:PE 0/1:0.521442:1:10:27,25 -chr3 68586656 DRAGEN:LOSS:chr3:68586657-68591117 N <DEL> 26 cnvLength SVTYPE=CNV;END=68591117;REFLEN=4461 GT:SM:CN:BC:PE 0/1:0.512013:1:4:0,24 -chr3 68689993 DRAGEN:LOSS:chr3:68689994-68698497 N <DEL> 32 cnvLength SVTYPE=CNV;END=68698497;REFLEN=8504 GT:SM:CN:BC:PE 0/1:0.504832:1:8:26,25 -chr3 75375220 DRAGEN:LOSS:chr3:75375221-75593491 N <DEL> 67 PASS SVTYPE=CNV;END=75593491;REFLEN=218271 GT:SM:CN:BC:PE 0/1:0.476674:1:61:6,21 -chr3 75687411 DRAGEN:GAIN:chr3:75687412-75707542 N <DUP> 44 PASS SVTYPE=CNV;END=75707542;REFLEN=20131 GT:SM:CN:BC:PE ./1:1.59195:3:9:52,35 -chr3 75736180 DRAGEN:GAIN:chr3:75736181-75738957 N <DUP> 37 cnvLength SVTYPE=CNV;END=75738957;REFLEN=2777 GT:SM:CN:BC:PE ./1:1.76308:4:2:32,8 -chr3 80012043 DRAGEN:LOSS:chr3:80012044-80015227 N <DEL> 22 cnvLength SVTYPE=CNV;END=80015227;REFLEN=3184 GT:SM:CN:BC:PE 0/1:0.539263:1:3:9,40 -chr3 84055389 DRAGEN:LOSS:chr3:84055390-84058391 N <DEL> 24 cnvLength SVTYPE=CNV;END=84058391;REFLEN=3002 GT:SM:CN:BC:PE 0/1:0.507068:1:3:20,16 -chr3 90536015 DRAGEN:LOSS:chr3:90536016-90538708 N <DEL> 28 cnvLength SVTYPE=CNV;END=90538708;REFLEN=2693 GT:SM:CN:BC:PE 0/1:0.404682:1:2:51,46 -chr3 90560516 DRAGEN:GAIN:chr3:90560517-90563765 N <DUP> 53 cnvLength SVTYPE=CNV;END=90563765;REFLEN=3249 GT:SM:CN:BC:PE ./1:1.98103:4:2:22,20 -chr3 98690951 DRAGEN:LOSS:chr3:98690952-98695839 N <DEL> 17 cnvLength SVTYPE=CNV;END=98695839;REFLEN=4888 GT:SM:CN:BC:PE 0/1:0.604545:1:4:25,22 -chr3 99179614 DRAGEN:LOSS:chr3:99179615-99180682 N <DEL> 22 cnvLength SVTYPE=CNV;END=99180682;REFLEN=1068 GT:SM:CN:BC:PE 0/1:0.233412:1:1:73,55 -chr3 99180682 DRAGEN:LOSS:chr3:99180683-99182728 N <DEL> 55 cnvLength SVTYPE=CNV;END=99182728;REFLEN=2046 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:2:55,62 -chr3 99182728 DRAGEN:LOSS:chr3:99182729-99184062 N <DEL> 24 cnvLength SVTYPE=CNV;END=99184062;REFLEN=1334 GT:SM:CN:BC:PE 0/1:0.328202:1:1:62,59 -chr3 99909240 DRAGEN:LOSS:chr3:99909241-99912240 N <DEL> 17 cnvLength SVTYPE=CNV;END=99912240;REFLEN=3000 GT:SM:CN:BC:PE 0/1:0.587555:1:3:37,3 -chr3 101638393 DRAGEN:LOSS:chr3:101638394-101643269 N <DEL> 9 cnvLength SVTYPE=CNV;END=101643269;REFLEN=4876 GT:SM:CN:BC:PE 0/1:0.660076:1:4:27,8 -chr3 111525217 DRAGEN:LOSS:chr3:111525218-111529387 N <DEL> 63 cnvLength SVTYPE=CNV;END=111529387;REFLEN=4170 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:3:16,15 -chr3 125953770 DRAGEN:LOSS:chr3:125953771-125956651 N <DEL> 59 cnvLength SVTYPE=CNV;END=125956651;REFLEN=2881 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:2:0,59 -chr3 131989421 DRAGEN:LOSS:chr3:131989422-131994116 N <DEL> 30 cnvLength SVTYPE=CNV;END=131994116;REFLEN=4695 GT:SM:CN:BC:PE 0/1:0.467539:1:4:41,28 -chr3 132269989 DRAGEN:LOSS:chr3:132269990-132274491 N <DEL> 25 cnvLength SVTYPE=CNV;END=132274491;REFLEN=4502 GT:SM:CN:BC:PE 0/1:0.531699:1:4:36,5 -chr3 139114320 DRAGEN:LOSS:chr3:139114321-139116981 N <DEL> 26 cnvLength SVTYPE=CNV;END=139116981;REFLEN=2661 GT:SM:CN:BC:PE 0/1:0.170078:1:2:16,19 -chr3 146666609 DRAGEN:LOSS:chr3:146666610-146672696 N <DEL> 24 cnvLength SVTYPE=CNV;END=146672696;REFLEN=6087 GT:SM:CN:BC:PE 0/1:0.5539:1:6:21,21 -chr3 158631769 DRAGEN:LOSS:chr3:158631770-158634383 N <DEL> 28 cnvLength SVTYPE=CNV;END=158634383;REFLEN=2614 GT:SM:CN:BC:PE 0/1:0.371472:1:2:31,27 -chr3 162793771 DRAGEN:LOSS:chr3:162793772-162907876 N <DEL> 104 PASS SVTYPE=CNV;END=162907876;REFLEN=114105 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:106:50,44 -chr3 163047261 DRAGEN:LOSS:chr3:163047262-163051465 N <DEL> 63 cnvLength SVTYPE=CNV;END=163051465;REFLEN=4204 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:4:54,56 -chr3 178831770 DRAGEN:LOSS:chr3:178831771-178833778 N <DEL> 24 cnvLength SVTYPE=CNV;END=178833778;REFLEN=2008 GT:SM:CN:BC:PE 0/1:0.450145:1:2:47,48 -chr3 190018324 DRAGEN:LOSS:chr3:190018325-190023714 N <DEL> 4 cnvLength SVTYPE=CNV;END=190023714;REFLEN=5390 GT:SM:CN:BC:PE 0/1:0.70563:1:5:16,30 -chr3 191346952 DRAGEN:LOSS:chr3:191346953-191353984 N <DEL> 30 cnvLength SVTYPE=CNV;END=191353984;REFLEN=7032 GT:SM:CN:BC:PE 0/1:0.507068:1:7:26,29 -chr3 193157630 DRAGEN:LOSS:chr3:193157631-193168407 N <DEL> 34 PASS SVTYPE=CNV;END=193168407;REFLEN=10777 GT:SM:CN:BC:PE 0/1:0.496016:1:10:19,15 -chr3 195109133 DRAGEN:LOSS:chr3:195109134-195111415 N <DEL> 27 cnvLength SVTYPE=CNV;END=195111415;REFLEN=2282 GT:SM:CN:BC:PE 0/1:0.394926:1:2:43,50 -chr3 195692330 DRAGEN:GAIN:chr3:195692331-195730221 N <DUP> 85 PASS SVTYPE=CNV;END=195730221;REFLEN=37891 GT:SM:CN:BC:PE ./1:2.03982:4:23:5,50 -chr3 195743183 DRAGEN:GAIN:chr3:195743184-195750205 N <DUP> 42 cnvLength SVTYPE=CNV;END=195750205;REFLEN=7022 GT:SM:CN:BC:PE ./1:1.72697:3:5:70,16 -chr4 1627764 DRAGEN:LOSS:chr4:1627765-1628838 N <DEL> 22 cnvLength SVTYPE=CNV;END=1628838;REFLEN=1074 GT:SM:CN:BC:PE 0/1:0.383825:1:1:43,43 -chr4 8975473 DRAGEN:LOSS:chr4:8975474-8989669 N <DEL> 36 PASS SVTYPE=CNV;END=8989669;REFLEN=14196 GT:SM:CN:BC:PE 0/1:0.503953:1:8:2,3 -chr4 9160921 DRAGEN:LOSS:chr4:9160922-9210062 N <DEL> 93 PASS SVTYPE=CNV;END=9210062;REFLEN=49141 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:10:0,0 -chr4 9453981 DRAGEN:LOSS:chr4:9453982-9479020 N <DEL> 37 PASS SVTYPE=CNV;END=9479020;REFLEN=25039 GT:SM:CN:BC:PE 0/1:0.538589:1:10:12,9 -chr4 10208677 DRAGEN:LOSS:chr4:10208678-10232904 N <DEL> 42 PASS SVTYPE=CNV;END=10232904;REFLEN=24227 GT:SM:CN:BC:PE 0/1:0.492303:1:24:35,29 -chr4 14921953 DRAGEN:LOSS:chr4:14921954-14923786 N <DEL> 25 cnvLength SVTYPE=CNV;END=14923786;REFLEN=1833 GT:SM:CN:BC:PE 0/1:0.265227:1:1:4,8 -chr4 35201793 DRAGEN:LOSS:chr4:35201794-35203013 N <DEL> 23 cnvLength SVTYPE=CNV;END=35203013;REFLEN=1220 GT:SM:CN:BC:PE 0/1:0.261962:1:1:10,5 -chr4 35238144 DRAGEN:LOSS:chr4:35238145-35242688 N <DEL> 26 cnvLength SVTYPE=CNV;END=35242688;REFLEN=4544 GT:SM:CN:BC:PE 0/1:0.519445:1:4:28,26 -chr4 38261953 DRAGEN:LOSS:chr4:38261954-38264369 N <DEL> 23 cnvLength SVTYPE=CNV;END=38264369;REFLEN=2416 GT:SM:CN:BC:PE 0/1:0.504012:1:2:34,37 -chr4 42760690 DRAGEN:LOSS:chr4:42760691-42767440 N <DEL> 29 cnvLength SVTYPE=CNV;END=42767440;REFLEN=6750 GT:SM:CN:BC:PE 0/1:0.510514:1:6:20,21 -chr4 43449833 DRAGEN:LOSS:chr4:43449834-43452275 N <DEL> 39 cnvLength SVTYPE=CNV;END=43452275;REFLEN=2442 GT:SM:CN:BC:PE 1/1:0.100269:0:2:5,14 -chr4 46200396 DRAGEN:LOSS:chr4:46200397-46202396 N <DEL> 55 cnvLength SVTYPE=CNV;END=46202396;REFLEN=2000 GT:SM:CN:BC:PE 1/1:5.70636e-06:0:2:30,29 -chr4 49091134 DRAGEN:GAIN:chr4:49091135-49710847 N <DUP> 121 cnvBinSupportRatio SVTYPE=CNV;END=49710847;REFLEN=619713 GT:SM:CN:BC:PE ./1:2.0873:4:15:5152,6192 -chr4 61072749 DRAGEN:LOSS:chr4:61072750-61077102 N <DEL> 17 cnvLength SVTYPE=CNV;END=61077102;REFLEN=4353 GT:SM:CN:BC:PE 0/1:0.600273:1:4:23,27 -chr4 62802723 DRAGEN:LOSS:chr4:62802724-62810491 N <DEL> 27 cnvLength SVTYPE=CNV;END=62810491;REFLEN=7768 GT:SM:CN:BC:PE 0/1:0.547003:1:7:30,29 -chr4 63848004 DRAGEN:LOSS:chr4:63848005-63850250 N <DEL> 27 cnvLength SVTYPE=CNV;END=63850250;REFLEN=2246 GT:SM:CN:BC:PE 0/1:0.334421:1:2:4,7 -chr4 68625271 DRAGEN:LOSS:chr4:68625272-68626771 N <DEL> 23 cnvLength SVTYPE=CNV;END=68626771;REFLEN=1500 GT:SM:CN:BC:PE 0/1:0.193169:1:1:4,13 -chr4 70620439 DRAGEN:LOSS:chr4:70620440-70622805 N <DEL> 26 cnvLength SVTYPE=CNV;END=70622805;REFLEN=2366 GT:SM:CN:BC:PE 0/1:0.229466:1:2:10,7 -chr4 74560421 DRAGEN:LOSS:chr4:74560422-74562047 N <DEL> 33 cnvLength SVTYPE=CNV;END=74562047;REFLEN=1626 GT:SM:CN:BC:PE 1/1:0.11402:0:1:18,33 -chr4 91010393 DRAGEN:LOSS:chr4:91010394-91014567 N <DEL> 30 cnvLength SVTYPE=CNV;END=91014567;REFLEN=4174 GT:SM:CN:BC:PE 0/1:0.443512:1:4:26,55 -chr4 97432536 DRAGEN:LOSS:chr4:97432537-97437207 N <DEL> 31 cnvLength SVTYPE=CNV;END=97437207;REFLEN=4671 GT:SM:CN:BC:PE 0/1:0.416648:1:4:23,19 -chr4 118203762 DRAGEN:LOSS:chr4:118203763-118209053 N <DEL> 20 cnvLength SVTYPE=CNV;END=118209053;REFLEN=5291 GT:SM:CN:BC:PE 0/1:0.58397:1:5:19,26 -chr4 129141010 DRAGEN:LOSS:chr4:129141011-129147292 N <DEL> 34 cnvLength SVTYPE=CNV;END=129147292;REFLEN=6282 GT:SM:CN:BC:PE 0/1:0.425897:1:6:25,24 -chr4 134511960 DRAGEN:LOSS:chr4:134511961-134513960 N <DEL> 55 cnvLength SVTYPE=CNV;END=134513960;REFLEN=2000 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:2:54,52 -chr4 137170345 DRAGEN:LOSS:chr4:137170346-137179448 N <DEL> 35 cnvLength SVTYPE=CNV;END=137179448;REFLEN=9103 GT:SM:CN:BC:PE 0/1:0.468512:1:8:33,25 -chr4 145517464 DRAGEN:LOSS:chr4:145517465-145518602 N <DEL> 49 cnvLength SVTYPE=CNV;END=145518602;REFLEN=1138 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:43,66 -chr4 161529051 DRAGEN:LOSS:chr4:161529052-161530051 N <DEL> 48 cnvLength SVTYPE=CNV;END=161530051;REFLEN=1000 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:0,47 -chr4 162471897 DRAGEN:LOSS:chr4:162471898-162476177 N <DEL> 14 cnvLength SVTYPE=CNV;END=162476177;REFLEN=4280 GT:SM:CN:BC:PE 0/1:0.624488:1:4:31,30 -chr4 165080790 DRAGEN:LOSS:chr4:165080791-165083585 N <DEL> 58 cnvLength SVTYPE=CNV;END=165083585;REFLEN=2795 GT:SM:CN:BC:PE 1/1:1.35405e-05:0:2:47,43 -chr4 166082557 DRAGEN:LOSS:chr4:166082558-166083736 N <DEL> 22 cnvLength SVTYPE=CNV;END=166083736;REFLEN=1179 GT:SM:CN:BC:PE 0/1:0.209266:1:1:41,88 -chr4 171453312 DRAGEN:LOSS:chr4:171453313-171458890 N <DEL> 29 cnvLength SVTYPE=CNV;END=171458890;REFLEN=5578 GT:SM:CN:BC:PE 0/1:0.499019:1:5:28,23 -chr4 172066194 DRAGEN:LOSS:chr4:172066195-172072199 N <DEL> 19 cnvLength SVTYPE=CNV;END=172072199;REFLEN=6005 GT:SM:CN:BC:PE 0/1:0.593494:1:6:8,16 -chr4 172503765 DRAGEN:LOSS:chr4:172503766-172511714 N <DEL> 70 cnvLength SVTYPE=CNV;END=172511714;REFLEN=7949 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:7:51,47 -chr4 172511714 DRAGEN:LOSS:chr4:172511715-172512963 N <DEL> 23 cnvLength SVTYPE=CNV;END=172512963;REFLEN=1249 GT:SM:CN:BC:PE 0/1:0.354143:1:1:47,50 -chr4 173482699 DRAGEN:LOSS:chr4:173482700-173485136 N <DEL> 47 cnvLength SVTYPE=CNV;END=173485136;REFLEN=2437 GT:SM:CN:BC:PE 1/1:0.0683052:0:2:9,14 -chr4 185520339 DRAGEN:LOSS:chr4:185520340-185523457 N <DEL> 19 cnvLength SVTYPE=CNV;END=185523457;REFLEN=3118 GT:SM:CN:BC:PE 0/1:0.563492:1:3:28,27 -chr4 186171566 DRAGEN:LOSS:chr4:186171567-186172566 N <DEL> 22 cnvLength SVTYPE=CNV;END=186172566;REFLEN=1000 GT:SM:CN:BC:PE 0/1:0.34127:1:1:53,51 -chr4 186172566 DRAGEN:LOSS:chr4:186172567-186176967 N <DEL> 64 cnvLength SVTYPE=CNV;END=186176967;REFLEN=4401 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:4:51,46 -chr4 190107374 DRAGEN:GAIN:chr4:190107375-190112142 N <DUP> 142 cnvLength SVTYPE=CNV;END=190112142;REFLEN=4768 GT:SM:CN:BC:PE ./1:4.95238:10:3:8,4 -chr5 748928 DRAGEN:LOSS:chr5:748929-750669 N <DEL> 37 cnvLength SVTYPE=CNV;END=750669;REFLEN=1741 GT:SM:CN:BC:PE 1/1:0.100557:0:1:0,0 -chr5 10272469 DRAGEN:LOSS:chr5:10272470-10275333 N <DEL> 24 cnvLength SVTYPE=CNV;END=10275333;REFLEN=2864 GT:SM:CN:BC:PE 0/1:0.50819:1:2:11,6 -chr5 18643420 DRAGEN:LOSS:chr5:18643421-18647845 N <DEL> 28 cnvLength SVTYPE=CNV;END=18647845;REFLEN=4425 GT:SM:CN:BC:PE 0/1:0.484778:1:4:24,27 -chr5 42627794 DRAGEN:LOSS:chr5:42627795-42631273 N <DEL> 25 cnvLength SVTYPE=CNV;END=42631273;REFLEN=3479 GT:SM:CN:BC:PE 0/1:0.507937:1:3:9,9 -chr5 49600323 DRAGEN:GAIN:chr5:49600324-49659153 N <DUP> 150 PASS SVTYPE=CNV;END=49659153;REFLEN=58830 GT:SM:CN:BC:PE ./1:37.233:74:2:29893,33104 -chr5 58027140 DRAGEN:LOSS:chr5:58027141-58037491 N <DEL> 73 PASS SVTYPE=CNV;END=58037491;REFLEN=10351 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:10:29,31 -chr5 60705330 DRAGEN:LOSS:chr5:60705331-60709491 N <DEL> 5 cnvLength SVTYPE=CNV;END=60709491;REFLEN=4161 GT:SM:CN:BC:PE 0/1:0.699134:1:4:38,4 -chr5 71009823 DRAGEN:LOSS:chr5:71009824-71014596 N <DEL> 64 cnvLength SVTYPE=CNV;END=71014596;REFLEN=4773 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:4:0,4 -chr5 84653030 DRAGEN:LOSS:chr5:84653031-84658280 N <DEL> 66 cnvLength SVTYPE=CNV;END=84658280;REFLEN=5250 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:5:17,3 -chr5 84658280 DRAGEN:LOSS:chr5:84658281-84659714 N <DEL> 24 cnvLength SVTYPE=CNV;END=84659714;REFLEN=1434 GT:SM:CN:BC:PE 0/1:0.24951:1:1:3,4 -chr5 91203668 DRAGEN:LOSS:chr5:91203669-91205671 N <DEL> 55 cnvLength SVTYPE=CNV;END=91205671;REFLEN=2003 GT:SM:CN:BC:PE 1/1:4.94185e-06:0:2:39,38 -chr5 92343117 DRAGEN:LOSS:chr5:92343118-92346318 N <DEL> 29 cnvLength SVTYPE=CNV;END=92346318;REFLEN=3201 GT:SM:CN:BC:PE 0/1:0.294727:1:2:35,17 -chr5 106988245 DRAGEN:LOSS:chr5:106988246-106991247 N <DEL> 4 cnvLength SVTYPE=CNV;END=106991247;REFLEN=3002 GT:SM:CN:BC:PE 0/1:0.708285:1:3:18,23 -chr5 120044233 DRAGEN:LOSS:chr5:120044234-120048823 N <DEL> 19 cnvLength SVTYPE=CNV;END=120048823;REFLEN=4590 GT:SM:CN:BC:PE 0/1:0.588234:1:4:20,36 -chr5 128071868 DRAGEN:LOSS:chr5:128071869-128075103 N <DEL> 26 cnvLength SVTYPE=CNV;END=128075103;REFLEN=3235 GT:SM:CN:BC:PE 0/1:0.474873:1:3:20,17 -chr5 135778927 DRAGEN:LOSS:chr5:135778928-135779979 N <DEL> 23 cnvLength SVTYPE=CNV;END=135779979;REFLEN=1052 GT:SM:CN:BC:PE 0/1:0.31746:1:1:107,56 -chr5 135779979 DRAGEN:LOSS:chr5:135779980-135784225 N <DEL> 63 cnvLength SVTYPE=CNV;END=135784225;REFLEN=4246 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:4:56,42 -chr5 135784225 DRAGEN:LOSS:chr5:135784226-135785228 N <DEL> 21 cnvLength SVTYPE=CNV;END=135785228;REFLEN=1003 GT:SM:CN:BC:PE 0/1:0.412698:1:1:42,52 -chr5 137518429 DRAGEN:LOSS:chr5:137518430-137520895 N <DEL> 25 cnvLength SVTYPE=CNV;END=137520895;REFLEN=2466 GT:SM:CN:BC:PE 0/1:0.17227:1:2:26,23 -chr5 141174188 DRAGEN:GAIN:chr5:141174189-141177724 N <DUP> 80 cnvLength SVTYPE=CNV;END=141177724;REFLEN=3536 GT:SM:CN:BC:PE ./1:2.52729:5:3:26,4 -chr5 148172668 DRAGEN:LOSS:chr5:148172669-148175714 N <DEL> 28 cnvLength SVTYPE=CNV;END=148175714;REFLEN=3046 GT:SM:CN:BC:PE 0/1:0.43463:1:3:33,84 -chr5 151410401 DRAGEN:LOSS:chr5:151410402-151413823 N <DEL> 25 cnvLength SVTYPE=CNV;END=151413823;REFLEN=3422 GT:SM:CN:BC:PE 0/1:0.507068:1:3:2,9 -chr5 180949351 DRAGEN:LOSS:chr5:180949352-181005751 N <DEL> 51 PASS SVTYPE=CNV;END=181005751;REFLEN=56400 GT:SM:CN:BC:PE 0/1:0.487537:1:50:4,10 -chr6 256330 DRAGEN:GAIN:chr6:256331-296427 N <DUP> 45 PASS SVTYPE=CNV;END=296427;REFLEN=40097 GT:SM:CN:BC:PE ./1:1.51598:3:37:35,34 -chr6 296427 DRAGEN:GAIN:chr6:296428-381943 N <DUP> 96 PASS SVTYPE=CNV;END=381943;REFLEN=85516 GT:SM:CN:BC:PE ./1:2.05602:4:79:34,40 -chr6 666457 DRAGEN:LOSS:chr6:666458-667467 N <DEL> 48 cnvLength SVTYPE=CNV;END=667467;REFLEN=1010 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:56,42 -chr6 2567302 DRAGEN:LOSS:chr6:2567303-2571566 N <DEL> 17 cnvLength SVTYPE=CNV;END=2571566;REFLEN=4264 GT:SM:CN:BC:PE 0/1:0.597838:1:4:14,14 -chr6 3144674 DRAGEN:LOSS:chr6:3144675-3146221 N <DEL> 23 cnvLength SVTYPE=CNV;END=3146221;REFLEN=1547 GT:SM:CN:BC:PE 0/1:0.207818:1:1:157,60 -chr6 8337519 DRAGEN:LOSS:chr6:8337520-8341639 N <DEL> 26 cnvLength SVTYPE=CNV;END=8341639;REFLEN=4120 GT:SM:CN:BC:PE 0/1:0.501933:1:4:23,21 -chr6 17375747 DRAGEN:LOSS:chr6:17375748-17380973 N <DEL> 24 cnvLength SVTYPE=CNV;END=17380973;REFLEN=5226 GT:SM:CN:BC:PE 0/1:0.54333:1:4:28,25 -chr6 18401262 DRAGEN:LOSS:chr6:18401263-18403262 N <DEL> 26 cnvLength SVTYPE=CNV;END=18403262;REFLEN=2000 GT:SM:CN:BC:PE 0/1:0.297549:1:2:40,42 -chr6 29876479 DRAGEN:LOSS:chr6:29876480-29880341 N <DEL> 62 cnvLength SVTYPE=CNV;END=29880341;REFLEN=3862 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:2:39,35 -chr6 29880341 DRAGEN:LOSS:chr6:29880342-29882079 N <DEL> 25 cnvLength SVTYPE=CNV;END=29882079;REFLEN=1738 GT:SM:CN:BC:PE 0/1:0.257873:1:1:35,41 -chr6 31316751 DRAGEN:LOSS:chr6:31316752-31324822 N <DEL> 30 cnvLength SVTYPE=CNV;END=31324822;REFLEN=8071 GT:SM:CN:BC:PE 0/1:0.519084:1:7:13,29 -chr6 31324822 DRAGEN:LOSS:chr6:31324823-31328816 N <DEL> 62 cnvLength SVTYPE=CNV;END=31328816;REFLEN=3994 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:3:29,39 -chr6 31328816 DRAGEN:LOSS:chr6:31328817-31329992 N <DEL> 23 cnvLength SVTYPE=CNV;END=31329992;REFLEN=1176 GT:SM:CN:BC:PE 0/1:0.325397:1:1:39,40 -chr6 32482721 DRAGEN:LOSS:chr6:32482722-32487315 N <DEL> 25 cnvLength SVTYPE=CNV;END=32487315;REFLEN=4594 GT:SM:CN:BC:PE 0/1:0.527174:1:4:72,32 -chr6 32487315 DRAGEN:LOSS:chr6:32487316-32508260 N <DEL> 82 PASS SVTYPE=CNV;END=32508260;REFLEN=20945 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:16:32,0 -chr6 32510791 DRAGEN:LOSS:chr6:32510792-32548699 N <DEL> 49 PASS SVTYPE=CNV;END=32548699;REFLEN=37908 GT:SM:CN:BC:PE 0/1:0.449064:1:31:23,55 -chr6 32555579 DRAGEN:LOSS:chr6:32555580-32561386 N <DEL> 67 cnvLength SVTYPE=CNV;END=32561386;REFLEN=5807 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:5:27,16 -chr6 32561386 DRAGEN:LOSS:chr6:32561387-32581401 N <DEL> 33 PASS SVTYPE=CNV;END=32581401;REFLEN=20015 GT:SM:CN:BC:PE 0/1:0.55123:1:16:16,26 -chr6 32650923 DRAGEN:LOSS:chr6:32650924-32658146 N <DEL> 32 cnvLength SVTYPE=CNV;END=32658146;REFLEN=7223 GT:SM:CN:BC:PE 0/1:0.484127:1:5:27,145 -chr6 33057536 DRAGEN:LOSS:chr6:33057537-33068822 N <DEL> 14 PASS SVTYPE=CNV;END=33068822;REFLEN=11286 GT:SM:CN:BC:PE 0/1:0.642857:1:7:13,6 -chr6 35658419 DRAGEN:LOSS:chr6:35658420-35662195 N <DEL> 24 cnvLength SVTYPE=CNV;END=35662195;REFLEN=3776 GT:SM:CN:BC:PE 0/1:0.52381:1:3:37,27 -chr6 35786589 DRAGEN:GAIN:chr6:35786590-35799129 N <DUP> 36 PASS SVTYPE=CNV;END=35799129;REFLEN=12540 GT:SM:CN:BC:PE ./1:1.53318:3:11:27,34 -chr6 47596759 DRAGEN:LOSS:chr6:47596760-47598995 N <DEL> 24 cnvLength SVTYPE=CNV;END=47598995;REFLEN=2236 GT:SM:CN:BC:PE 0/1:0.464035:1:2:30,33 -chr6 51870199 DRAGEN:LOSS:chr6:51870200-51872199 N <DEL> 24 cnvLength SVTYPE=CNV;END=51872199;REFLEN=2000 GT:SM:CN:BC:PE 0/1:0.45651:1:2:35,89 -chr6 54063778 DRAGEN:LOSS:chr6:54063779-54070034 N <DEL> 26 cnvLength SVTYPE=CNV;END=54070034;REFLEN=6256 GT:SM:CN:BC:PE 0/1:0.537159:1:6:29,16 -chr6 54981375 DRAGEN:LOSS:chr6:54981376-54986969 N <DEL> 11 cnvLength SVTYPE=CNV;END=54986969;REFLEN=5594 GT:SM:CN:BC:PE 0/1:0.651945:1:5:29,29 -chr6 62213477 DRAGEN:LOSS:chr6:62213478-62219655 N <DEL> 23 cnvLength SVTYPE=CNV;END=62219655;REFLEN=6178 GT:SM:CN:BC:PE 0/1:0.566727:1:6:26,24 -chr6 65000883 DRAGEN:LOSS:chr6:65000884-65005882 N <DEL> 65 cnvLength SVTYPE=CNV;END=65005882;REFLEN=4999 GT:SM:CN:BC:PE 1/1:4.78728e-06:0:4:55,50 -chr6 66298833 DRAGEN:LOSS:chr6:66298834-66338613 N <DEL> 48 PASS SVTYPE=CNV;END=66338613;REFLEN=39780 GT:SM:CN:BC:PE 0/1:0.478531:1:37:23,30 -chr6 72154216 DRAGEN:LOSS:chr6:72154217-72158915 N <DEL> 26 cnvLength SVTYPE=CNV;END=72158915;REFLEN=4699 GT:SM:CN:BC:PE 0/1:0.519705:1:4:20,3 -chr6 73881506 DRAGEN:LOSS:chr6:73881507-73892390 N <DEL> 30 PASS SVTYPE=CNV;END=73892390;REFLEN=10884 GT:SM:CN:BC:PE 0/1:0.53731:1:10:22,20 -chr6 73904153 DRAGEN:LOSS:chr6:73904154-73910372 N <DEL> 28 cnvLength SVTYPE=CNV;END=73910372;REFLEN=6219 GT:SM:CN:BC:PE 0/1:0.523933:1:4:21,20 -chr6 76387527 DRAGEN:LOSS:chr6:76387528-76390975 N <DEL> 25 cnvLength SVTYPE=CNV;END=76390975;REFLEN=3448 GT:SM:CN:BC:PE 0/1:0.507931:1:3:12,0 -chr6 76729312 DRAGEN:LOSS:chr6:76729313-76742997 N <DEL> 40 PASS SVTYPE=CNV;END=76742997;REFLEN=13685 GT:SM:CN:BC:PE 0/1:0.422354:1:9:1,2 -chr6 80573607 DRAGEN:LOSS:chr6:80573608-80584016 N <DEL> 29 PASS SVTYPE=CNV;END=80584016;REFLEN=10409 GT:SM:CN:BC:PE 0/1:0.547336:1:10:18,17 -chr6 87127175 DRAGEN:LOSS:chr6:87127176-87128653 N <DEL> 23 cnvLength SVTYPE=CNV;END=87128653;REFLEN=1478 GT:SM:CN:BC:PE 0/1:0.211708:1:1:23,29 -chr6 95307752 DRAGEN:LOSS:chr6:95307753-95316816 N <DEL> 33 cnvLength SVTYPE=CNV;END=95316816;REFLEN=9064 GT:SM:CN:BC:PE 0/1:0.494752:1:9:26,23 -chr6 132385414 DRAGEN:LOSS:chr6:132385415-132392358 N <DEL> 10 cnvLength SVTYPE=CNV;END=132392358;REFLEN=6944 GT:SM:CN:BC:PE 0/1:0.659361:1:6:26,12 -chr6 148875660 DRAGEN:LOSS:chr6:148875661-148878868 N <DEL> 3 cnvLength SVTYPE=CNV;END=148878868;REFLEN=3208 GT:SM:CN:BC:PE 0/1:0.7136:1:3:16,33 -chr6 159664279 DRAGEN:LOSS:chr6:159664280-159667540 N <DEL> 26 cnvLength SVTYPE=CNV;END=159667540;REFLEN=3261 GT:SM:CN:BC:PE 0/1:0.479509:1:3:33,36 -chr6 162009830 DRAGEN:LOSS:chr6:162009831-162012173 N <DEL> 26 cnvLength SVTYPE=CNV;END=162012173;REFLEN=2343 GT:SM:CN:BC:PE 0/1:0.445206:1:2:10,16 -chr6 169804172 DRAGEN:LOSS:chr6:169804173-169809778 N <DEL> 6 cnvLength SVTYPE=CNV;END=169809778;REFLEN=5606 GT:SM:CN:BC:PE 0/1:0.685339:1:5:9,8 -chr6 170168152 DRAGEN:LOSS:chr6:170168153-170169937 N <DEL> 25 cnvLength SVTYPE=CNV;END=170169937;REFLEN=1785 GT:SM:CN:BC:PE 0/1:0.258732:1:1:23,21 -chr7 4117577 DRAGEN:LOSS:chr7:4117578-4120847 N <DEL> 25 cnvLength SVTYPE=CNV;END=4120847;REFLEN=3270 GT:SM:CN:BC:PE 0/1:0.499019:1:3:28,29 -chr7 22394287 DRAGEN:LOSS:chr7:22394288-22397291 N <DEL> 18 cnvLength SVTYPE=CNV;END=22397291;REFLEN=3004 GT:SM:CN:BC:PE 0/1:0.579365:1:3:28,32 -chr7 23998508 DRAGEN:LOSS:chr7:23998509-24000508 N <DEL> 55 cnvLength SVTYPE=CNV;END=24000508;REFLEN=2000 GT:SM:CN:BC:PE 1/1:1.33314e-05:0:2:53,28 -chr7 44226202 DRAGEN:LOSS:chr7:44226203-44228220 N <DEL> 20 cnvLength SVTYPE=CNV;END=44228220;REFLEN=2018 GT:SM:CN:BC:PE 0/1:0.524198:1:2:30,38 -chr7 51525987 DRAGEN:LOSS:chr7:51525988-51532139 N <DEL> 22 cnvLength SVTYPE=CNV;END=51532139;REFLEN=6152 GT:SM:CN:BC:PE 0/1:0.571429:1:5:27,25 -chr7 56368469 DRAGEN:LOSS:chr7:56368470-56370019 N <DEL> 52 cnvLength SVTYPE=CNV;END=56370019;REFLEN=1550 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:41,2 -chr7 57409597 DRAGEN:LOSS:chr7:57409598-57418190 N <DEL> 35 cnvLength SVTYPE=CNV;END=57418190;REFLEN=8593 GT:SM:CN:BC:PE 0/1:0.462368:1:8:29,22 -chr7 61045759 DRAGEN:GAIN:chr7:61045760-61052411 N <DUP> 29 cnvLength SVTYPE=CNV;END=61052411;REFLEN=6652 GT:SM:CN:BC:PE ./1:1.51316:3:5:48,137 -chr7 62384106 DRAGEN:GAIN:chr7:62384107-62409374 N <DUP> 58 PASS SVTYPE=CNV;END=62409374;REFLEN=25268 GT:SM:CN:BC:PE ./1:1.79457:4:6:51,67 -chr7 65225919 DRAGEN:LOSS:chr7:65225920-65228104 N <DEL> 29 cnvLength SVTYPE=CNV;END=65228104;REFLEN=2185 GT:SM:CN:BC:PE 1/1:0.137277:0:2:6,58 -chr7 70955199 DRAGEN:LOSS:chr7:70955200-70960915 N <DEL> 26 cnvLength SVTYPE=CNV;END=70960915;REFLEN=5716 GT:SM:CN:BC:PE 0/1:0.532788:1:5:28,30 -chr7 74134389 DRAGEN:LOSS:chr7:74134390-74137550 N <DEL> 27 cnvLength SVTYPE=CNV;END=74137550;REFLEN=3161 GT:SM:CN:BC:PE 0/1:0.460795:1:2:25,31 -chr7 74414078 DRAGEN:LOSS:chr7:74414079-74417063 N <DEL> 59 cnvLength SVTYPE=CNV;END=74417063;REFLEN=2985 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:2:47,41 -chr7 76515393 DRAGEN:LOSS:chr7:76515394-76518051 N <DEL> 22 cnvLength SVTYPE=CNV;END=76518051;REFLEN=2658 GT:SM:CN:BC:PE 0/1:0.518682:1:2:26,6 -chr7 84423898 DRAGEN:LOSS:chr7:84423899-84425002 N <DEL> 23 cnvLength SVTYPE=CNV;END=84425002;REFLEN=1104 GT:SM:CN:BC:PE 0/1:0.261962:1:1:5,12 -chr7 96914338 DRAGEN:LOSS:chr7:96914339-96916573 N <DEL> 26 cnvLength SVTYPE=CNV;END=96916573;REFLEN=2235 GT:SM:CN:BC:PE 0/1:0.430404:1:2:16,21 -chr7 100729038 DRAGEN:LOSS:chr7:100729039-100745203 N <DEL> 34 PASS SVTYPE=CNV;END=100745203;REFLEN=16165 GT:SM:CN:BC:PE 0/1:0.536966:1:9:22,6 -chr7 100955984 DRAGEN:GAIN:chr7:100955985-100969873 N <DUP> 40 PASS SVTYPE=CNV;END=100969873;REFLEN=13889 GT:SM:CN:BC:PE ./1:1.5763:3:12:61,85 -chr7 101415123 DRAGEN:LOSS:chr7:101415124-101417578 N <DEL> 27 cnvLength SVTYPE=CNV;END=101417578;REFLEN=2455 GT:SM:CN:BC:PE 0/1:0.309063:1:2:48,50 -chr7 109801954 DRAGEN:LOSS:chr7:109801955-109813192 N <DEL> 74 PASS SVTYPE=CNV;END=109813192;REFLEN=11238 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:10:0,31 -chr7 110541589 DRAGEN:LOSS:chr7:110541590-110548681 N <DEL> 29 cnvLength SVTYPE=CNV;END=110548681;REFLEN=7092 GT:SM:CN:BC:PE 0/1:0.519084:1:7:18,20 -chr7 119190727 DRAGEN:LOSS:chr7:119190728-119194728 N <DEL> 23 cnvLength SVTYPE=CNV;END=119194728;REFLEN=4001 GT:SM:CN:BC:PE 0/1:0.542556:1:4:25,25 -chr7 126408720 DRAGEN:LOSS:chr7:126408721-126410797 N <DEL> 55 cnvLength SVTYPE=CNV;END=126410797;REFLEN=2077 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:2:0,48 -chr7 130056400 DRAGEN:LOSS:chr7:130056401-130057973 N <DEL> 25 cnvLength SVTYPE=CNV;END=130057973;REFLEN=1573 GT:SM:CN:BC:PE 0/1:0.324428:1:1:16,18 -chr7 134100246 DRAGEN:LOSS:chr7:134100247-134114019 N <DEL> 36 PASS SVTYPE=CNV;END=134114019;REFLEN=13773 GT:SM:CN:BC:PE 0/1:0.496994:1:12:21,17 -chr7 142346085 DRAGEN:LOSS:chr7:142346086-142351408 N <DEL> 29 cnvLength SVTYPE=CNV;END=142351408;REFLEN=5323 GT:SM:CN:BC:PE 0/1:0.206349:1:5:6,1 -chr7 143847159 DRAGEN:GAIN:chr7:143847160-143850286 N <DUP> 46 cnvLength SVTYPE=CNV;END=143850286;REFLEN=3127 GT:SM:CN:BC:PE ./1:1.88168:4:3:3,5 -chr7 145073279 DRAGEN:LOSS:chr7:145073280-145078938 N <DEL> 31 cnvLength SVTYPE=CNV;END=145078938;REFLEN=5659 GT:SM:CN:BC:PE 0/1:0.462965:1:5:19,12 -chr7 147604387 DRAGEN:LOSS:chr7:147604388-147606397 N <DEL> 23 cnvLength SVTYPE=CNV;END=147606397;REFLEN=2010 GT:SM:CN:BC:PE 0/1:0.471805:1:2:2,26 -chr7 148374793 DRAGEN:LOSS:chr7:148374794-148379247 N <DEL> 25 cnvLength SVTYPE=CNV;END=148379247;REFLEN=4454 GT:SM:CN:BC:PE 0/1:0.527578:1:4:14,12 -chr7 152378643 DRAGEN:GAIN:chr7:152378644-152383411 N <DUP> 43 cnvLength SVTYPE=CNV;END=152383411;REFLEN=4768 GT:SM:CN:BC:PE ./1:1.78864:4:3:18,55 -chr7 152402281 DRAGEN:GAIN:chr7:152402282-152406508 N <DUP> 61 cnvLength SVTYPE=CNV;END=152406508;REFLEN=4227 GT:SM:CN:BC:PE ./1:2.09424:4:3:133,206 -chr7 158595166 DRAGEN:GAIN:chr7:158595167-158596203 N <DUP> 123 cnvLength SVTYPE=CNV;END=158596203;REFLEN=1037 GT:SM:CN:BC:PE ./1:8.1168:16:1:784,767 -chr7 158707513 DRAGEN:LOSS:chr7:158707514-158711583 N <DEL> 28 cnvLength SVTYPE=CNV;END=158711583;REFLEN=4070 GT:SM:CN:BC:PE 0/1:0.479509:1:3:30,31 -chr8 644391 DRAGEN:LOSS:chr8:644392-649424 N <DEL> 65 cnvLength SVTYPE=CNV;END=649424;REFLEN=5033 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:5:48,52 -chr8 4265451 DRAGEN:LOSS:chr8:4265452-4267451 N <DEL> 55 cnvLength SVTYPE=CNV;END=4267451;REFLEN=2000 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:2:27,27 -chr8 6111654 DRAGEN:LOSS:chr8:6111655-6115288 N <DEL> 5 cnvLength SVTYPE=CNV;END=6115288;REFLEN=3634 GT:SM:CN:BC:PE 0/1:0.69622:1:3:10,19 -chr8 12560048 DRAGEN:GAIN:chr8:12560049-12584463 N <DUP> 126 PASS SVTYPE=CNV;END=12584463;REFLEN=24415 GT:SM:CN:BC:PE ./1:3.1896:6:2:12,23 -chr8 15544109 DRAGEN:LOSS:chr8:15544110-15556959 N <DEL> 39 PASS SVTYPE=CNV;END=15556959;REFLEN=12850 GT:SM:CN:BC:PE 0/1:0.429867:1:11:30,28 -chr8 25114407 DRAGEN:LOSS:chr8:25114408-25132807 N <DEL> 39 PASS SVTYPE=CNV;END=25132807;REFLEN=18400 GT:SM:CN:BC:PE 0/1:0.5:1:17:28,29 -chr8 25209411 DRAGEN:LOSS:chr8:25209412-25212941 N <DEL> 61 cnvLength SVTYPE=CNV;END=25212941;REFLEN=3530 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:3:50,46 -chr8 32822459 DRAGEN:LOSS:chr8:32822460-32833520 N <DEL> 74 PASS SVTYPE=CNV;END=32833520;REFLEN=11061 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:10:59,43 -chr8 39375061 DRAGEN:LOSS:chr8:39375062-39529533 N <DEL> 60 PASS SVTYPE=CNV;END=39529533;REFLEN=154472 GT:SM:CN:BC:PE 0/1:0.503576:1:138:20,17 -chr8 40916708 DRAGEN:LOSS:chr8:40916709-40922334 N <DEL> 66 cnvLength SVTYPE=CNV;END=40922334;REFLEN=5626 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:5:52,47 -chr8 42333155 DRAGEN:LOSS:chr8:42333156-42336529 N <DEL> 61 cnvLength SVTYPE=CNV;END=42336529;REFLEN=3374 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:3:49,47 -chr8 62121210 DRAGEN:LOSS:chr8:62121211-62128238 N <DEL> 24 cnvLength SVTYPE=CNV;END=62128238;REFLEN=7028 GT:SM:CN:BC:PE 0/1:0.563492:1:7:8,21 -chr8 73920978 DRAGEN:LOSS:chr8:73920979-73924999 N <DEL> 25 cnvLength SVTYPE=CNV;END=73924999;REFLEN=4021 GT:SM:CN:BC:PE 0/1:0.52381:1:3:22,23 -chr8 74449873 DRAGEN:LOSS:chr8:74449874-74454363 N <DEL> 27 cnvLength SVTYPE=CNV;END=74454363;REFLEN=4490 GT:SM:CN:BC:PE 0/1:0.508953:1:4:19,24 -chr8 111282070 DRAGEN:LOSS:chr8:111282071-111284315 N <DEL> 56 cnvLength SVTYPE=CNV;END=111284315;REFLEN=2245 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:2:57,59 -chr8 126179582 DRAGEN:LOSS:chr8:126179583-126182740 N <DEL> 26 cnvLength SVTYPE=CNV;END=126182740;REFLEN=3158 GT:SM:CN:BC:PE 0/1:0.474873:1:3:30,35 -chr8 136146022 DRAGEN:LOSS:chr8:136146023-136152022 N <DEL> 16 cnvLength SVTYPE=CNV;END=136152022;REFLEN=6000 GT:SM:CN:BC:PE 0/1:0.618437:1:6:3,31 -chr8 137729819 DRAGEN:LOSS:chr8:137729820-137731844 N <DEL> 26 cnvLength SVTYPE=CNV;END=137731844;REFLEN=2025 GT:SM:CN:BC:PE 0/1:0.39841:1:2:40,38 -chr8 144125572 DRAGEN:GAIN:chr8:144125573-144126580 N <DUP> 122 cnvLength SVTYPE=CNV;END=144126580;REFLEN=1008 GT:SM:CN:BC:PE ./1:4.77618:10:1:73,76 -chr8 145071008 DRAGEN:LOSS:chr8:145071009-145076762 N <DEL> 28 cnvLength SVTYPE=CNV;END=145076762;REFLEN=5754 GT:SM:CN:BC:PE 0/1:0.507808:1:2:5,52 -chr9 6700575 DRAGEN:LOSS:chr9:6700576-6710802 N <DEL> 32 PASS SVTYPE=CNV;END=6710802;REFLEN=10227 GT:SM:CN:BC:PE 0/1:0.516979:1:8:18,27 -chr9 23362491 DRAGEN:LOSS:chr9:23362492-23377315 N <DEL> 34 PASS SVTYPE=CNV;END=23377315;REFLEN=14824 GT:SM:CN:BC:PE 0/1:0.523749:1:14:23,24 -chr9 28846002 DRAGEN:LOSS:chr9:28846003-28849079 N <DEL> 26 cnvLength SVTYPE=CNV;END=28849079;REFLEN=3077 GT:SM:CN:BC:PE 0/1:0.47619:1:3:16,18 -chr9 31290892 DRAGEN:LOSS:chr9:31290893-31292898 N <DEL> 24 cnvLength SVTYPE=CNV;END=31292898;REFLEN=2006 GT:SM:CN:BC:PE 0/1:0.193449:1:2:33,37 -chr9 36362519 DRAGEN:LOSS:chr9:36362520-36364766 N <DEL> 27 cnvLength SVTYPE=CNV;END=36364766;REFLEN=2247 GT:SM:CN:BC:PE 1/1:0.153516:0:2:39,39 -chr9 39015845 DRAGEN:GAIN:chr9:39015846-39588966 N <DUP> 118 cnvBinSupportRatio SVTYPE=CNV;END=39588966;REFLEN=573121 GT:SM:CN:BC:PE ./1:2.14113:4:9:5,2 -chr9 40868678 DRAGEN:GAIN:chr9:40868679-41050016 N <DUP> 100 cnvBinSupportRatio SVTYPE=CNV;END=41050016;REFLEN=181338 GT:SM:CN:BC:PE ./1:1.95985:4:28:45,11 -chr9 42386877 DRAGEN:GAIN:chr9:42386878-42389275 N <DUP> 105 cnvLength SVTYPE=CNV;END=42389275;REFLEN=2398 GT:SM:CN:BC:PE ./1:3.45266:7:2:59,16 -chr9 42457553 DRAGEN:LOSS:chr9:42457554-42719610 N <DEL> 68 cnvBinSupportRatio SVTYPE=CNV;END=42719610;REFLEN=262057 GT:SM:CN:BC:PE 0/1:0.493518:1:8:0,0 -chr9 63816631 DRAGEN:GAIN:chr9:63816632-63817978 N <DUP> 126 cnvLength SVTYPE=CNV;END=63817978;REFLEN=1347 GT:SM:CN:BC:PE ./1:5.23567:10:1:70,70 -chr9 69122381 DRAGEN:LOSS:chr9:69122382-69128406 N <DEL> 21 cnvLength SVTYPE=CNV;END=69128406;REFLEN=6025 GT:SM:CN:BC:PE 0/1:0.57826:1:5:24,30 -chr9 69279468 DRAGEN:LOSS:chr9:69279469-69282417 N <DEL> 26 cnvLength SVTYPE=CNV;END=69282417;REFLEN=2949 GT:SM:CN:BC:PE 0/1:0.473036:1:2:45,32 -chr9 105036262 DRAGEN:LOSS:chr9:105036263-105042828 N <DEL> 27 cnvLength SVTYPE=CNV;END=105042828;REFLEN=6566 GT:SM:CN:BC:PE 0/1:0.532192:1:6:25,14 -chr9 128138127 DRAGEN:LOSS:chr9:128138128-128140780 N <DEL> 25 cnvLength SVTYPE=CNV;END=128140780;REFLEN=2653 GT:SM:CN:BC:PE 0/1:0.47364:1:2:40,48 -chr9 128649539 DRAGEN:LOSS:chr9:128649540-128652497 N <DEL> 36 cnvLength SVTYPE=CNV;END=128652497;REFLEN=2958 GT:SM:CN:BC:PE 1/1:0.114252:0:2:43,43 -chr9 133070584 DRAGEN:GAIN:chr9:133070585-133081919 N <DUP> 44 PASS SVTYPE=CNV;END=133081919;REFLEN=11335 GT:SM:CN:BC:PE ./1:1.69841:3:9:14,5 -chr9 135030776 DRAGEN:LOSS:chr9:135030777-135031830 N <DEL> 22 cnvLength SVTYPE=CNV;END=135031830;REFLEN=1054 GT:SM:CN:BC:PE 0/1:0.254744:1:1:52,73 -chr9 135322449 DRAGEN:LOSS:chr9:135322450-135325511 N <DEL> 59 cnvLength SVTYPE=CNV;END=135325511;REFLEN=3062 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:3:54,52 -chr9 137358689 DRAGEN:LOSS:chr9:137358690-137361189 N <DEL> 57 cnvLength SVTYPE=CNV;END=137361189;REFLEN=2500 GT:SM:CN:BC:PE 1/1:6.09083e-06:0:2:14,10 -chr10 2391968 DRAGEN:GAIN:chr10:2391969-2393024 N <DUP> 116 cnvLength SVTYPE=CNV;END=2393024;REFLEN=1056 GT:SM:CN:BC:PE ./1:4.3541:9:1:220,212 -chr10 4247249 DRAGEN:LOSS:chr10:4247250-4248249 N <DEL> 22 cnvLength SVTYPE=CNV;END=4248249;REFLEN=1000 GT:SM:CN:BC:PE 0/1:0.382902:1:1:51,49 -chr10 4248249 DRAGEN:LOSS:chr10:4248250-4249249 N <DEL> 48 cnvLength SVTYPE=CNV;END=4249249;REFLEN=1000 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:49,53 -chr10 4666065 DRAGEN:LOSS:chr10:4666066-4668073 N <DEL> 55 cnvLength SVTYPE=CNV;END=4668073;REFLEN=2008 GT:SM:CN:BC:PE 1/1:4.035e-06:0:2:55,50 -chr10 8268376 DRAGEN:LOSS:chr10:8268377-8269930 N <DEL> 24 cnvLength SVTYPE=CNV;END=8269930;REFLEN=1554 GT:SM:CN:BC:PE 0/1:0.265227:1:1:18,20 -chr10 26709423 DRAGEN:LOSS:chr10:26709424-26711241 N <DEL> 25 cnvLength SVTYPE=CNV;END=26711241;REFLEN=1818 GT:SM:CN:BC:PE 0/1:0.251171:1:1:44,41 -chr10 26711241 DRAGEN:LOSS:chr10:26711242-26712449 N <DEL> 50 cnvLength SVTYPE=CNV;END=26712449;REFLEN=1208 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:41,41 -chr10 27347450 DRAGEN:LOSS:chr10:27347451-27353902 N <DEL> 4 cnvLength SVTYPE=CNV;END=27353902;REFLEN=6452 GT:SM:CN:BC:PE 0/1:0.706349:1:5:41,31 -chr10 38526736 DRAGEN:GAIN:chr10:38526737-38528684 N <DUP> 131 cnvLength SVTYPE=CNV;END=38528684;REFLEN=1948 GT:SM:CN:BC:PE ./1:5.3254:11:1:675,420 -chr10 38941858 DRAGEN:GAIN:chr10:38941859-38961662 N <DUP> 13 PASS SVTYPE=CNV;END=38961662;REFLEN=19804 GT:SM:CN:BC:PE ./1:1.30956:3:5:63,13 -chr10 39256688 DRAGEN:LOSS:chr10:39256689-39267943 N <DEL> 75 PASS SVTYPE=CNV;END=39267943;REFLEN=11255 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:8:48,54 -chr10 39337005 DRAGEN:LOSS:chr10:39337006-39341533 N <DEL> 8 cnvLength SVTYPE=CNV;END=39341533;REFLEN=4528 GT:SM:CN:BC:PE 0/1:0.668042:1:3:67,41 -chr10 39341533 DRAGEN:LOSS:chr10:39341534-39360073 N <DEL> 81 PASS SVTYPE=CNV;END=39360073;REFLEN=18540 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:10:41,36 -chr10 39545807 DRAGEN:GAIN:chr10:39545808-39549942 N <DUP> 40 cnvLength SVTYPE=CNV;END=39549942;REFLEN=4135 GT:SM:CN:BC:PE ./1:1.75462:4:3:54,37 -chr10 41857569 DRAGEN:GAIN:chr10:41857570-42088651 N <DUP> 150 cnvBinSupportRatio SVTYPE=CNV;END=42088651;REFLEN=231082 GT:SM:CN:BC:PE ./1:2.96032:6:17:4609,839 -chr10 42160064 DRAGEN:GAIN:chr10:42160065-42173508 N <DUP> 78 PASS SVTYPE=CNV;END=42173508;REFLEN=13444 GT:SM:CN:BC:PE ./1:2.17851:4:8:26,190 -chr10 46106524 DRAGEN:GAIN:chr10:46106525-46332501 N <DUP> 62 PASS SVTYPE=CNV;END=46332501;REFLEN=225977 GT:SM:CN:BC:PE ./1:1.49206:3:127:156,1 -chr10 46514859 DRAGEN:GAIN:chr10:46514860-46560711 N <DUP> 150 PASS SVTYPE=CNV;END=46560711;REFLEN=45852 GT:SM:CN:BC:PE ./1:3.92177:8:42:2,12 -chr10 49794060 DRAGEN:LOSS:chr10:49794061-49803465 N <DEL> 33 cnvLength SVTYPE=CNV;END=49803465;REFLEN=9405 GT:SM:CN:BC:PE 0/1:0.496994:1:8:33,26 -chr10 50148772 DRAGEN:LOSS:chr10:50148773-50151726 N <DEL> 27 cnvLength SVTYPE=CNV;END=50151726;REFLEN=2954 GT:SM:CN:BC:PE 0/1:0.24878:1:2:32,46 -chr10 63748533 DRAGEN:LOSS:chr10:63748534-63751094 N <DEL> 24 cnvLength SVTYPE=CNV;END=63751094;REFLEN=2561 GT:SM:CN:BC:PE 0/1:0.497301:1:2:27,21 -chr10 65546751 DRAGEN:LOSS:chr10:65546752-65555346 N <DEL> 71 cnvLength SVTYPE=CNV;END=65555346;REFLEN=8595 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:8:41,38 -chr10 76495364 DRAGEN:LOSS:chr10:76495365-76500487 N <DEL> 65 cnvLength SVTYPE=CNV;END=76500487;REFLEN=5123 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:5:44,43 -chr10 76500487 DRAGEN:LOSS:chr10:76500488-76501523 N <DEL> 22 cnvLength SVTYPE=CNV;END=76501523;REFLEN=1036 GT:SM:CN:BC:PE 0/1:0.24951:1:1:43,51 -chr10 91872908 DRAGEN:LOSS:chr10:91872909-91875233 N <DEL> 27 cnvLength SVTYPE=CNV;END=91875233;REFLEN=2325 GT:SM:CN:BC:PE 0/1:0.317361:1:2:44,48 -chr10 93785585 DRAGEN:LOSS:chr10:93785586-93786585 N <DEL> 48 cnvLength SVTYPE=CNV;END=93786585;REFLEN=1000 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:34,48 -chr10 106190901 DRAGEN:LOSS:chr10:106190902-106191901 N <DEL> 26 cnvLength SVTYPE=CNV;END=106191901;REFLEN=1000 GT:SM:CN:BC:PE 1/1:0.136828:0:1:60,41 -chr10 112351828 DRAGEN:LOSS:chr10:112351829-112356331 N <DEL> 64 cnvLength SVTYPE=CNV;END=112356331;REFLEN=4503 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:4:45,30 -chr10 120466541 DRAGEN:LOSS:chr10:120466542-120467755 N <DEL> 23 cnvLength SVTYPE=CNV;END=120467755;REFLEN=1214 GT:SM:CN:BC:PE 0/1:0.296944:1:1:36,35 -chr10 120467755 DRAGEN:LOSS:chr10:120467756-120468839 N <DEL> 49 cnvLength SVTYPE=CNV;END=120468839;REFLEN=1084 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:35,31 -chr10 125895379 DRAGEN:GAIN:chr10:125895380-125906708 N <DUP> 12 PASS SVTYPE=CNV;END=125906708;REFLEN=11329 GT:SM:CN:BC:PE ./1:1.32062:3:5:24,78 -chr10 131190355 DRAGEN:LOSS:chr10:131190356-131192784 N <DEL> 26 cnvLength SVTYPE=CNV;END=131192784;REFLEN=2429 GT:SM:CN:BC:PE 0/1:0.438488:1:2:13,12 -chr10 131622110 DRAGEN:LOSS:chr10:131622111-131625092 N <DEL> 25 cnvLength SVTYPE=CNV;END=131625092;REFLEN=2982 GT:SM:CN:BC:PE 0/1:0.485934:1:2:23,99 -chr10 132326676 DRAGEN:GAIN:chr10:132326677-132550814 N <DUP> 69 PASS SVTYPE=CNV;END=132550814;REFLEN=224138 GT:SM:CN:BC:PE ./1:1.5821:3:207:27,24 -chr10 133427403 DRAGEN:LOSS:chr10:133427404-133429120 N <DEL> 24 cnvLength SVTYPE=CNV;END=133429120;REFLEN=1717 GT:SM:CN:BC:PE 0/1:0.206349:1:1:42,42 -chr11 4945654 DRAGEN:LOSS:chr11:4945655-4955199 N <DEL> 30 cnvLength SVTYPE=CNV;END=4955199;REFLEN=9545 GT:SM:CN:BC:PE 0/1:0.535244:1:8:3,7 -chr11 28985120 DRAGEN:LOSS:chr11:28985121-28991512 N <DEL> 29 cnvLength SVTYPE=CNV;END=28991512;REFLEN=6392 GT:SM:CN:BC:PE 0/1:0.514865:1:6:26,19 -chr11 31371735 DRAGEN:LOSS:chr11:31371736-31375941 N <DEL> 20 cnvLength SVTYPE=CNV;END=31375941;REFLEN=4206 GT:SM:CN:BC:PE 0/1:0.574046:1:4:21,16 -chr11 42792780 DRAGEN:LOSS:chr11:42792781-42797221 N <DEL> 30 cnvLength SVTYPE=CNV;END=42797221;REFLEN=4441 GT:SM:CN:BC:PE 0/1:0.456481:1:4:0,12 -chr11 47035440 DRAGEN:LOSS:chr11:47035441-47041774 N <DEL> 32 cnvLength SVTYPE=CNV;END=47041774;REFLEN=6334 GT:SM:CN:BC:PE 0/1:0.464286:1:3:33,31 -chr11 54756289 DRAGEN:LOSS:chr11:54756290-54777366 N <DEL> 41 PASS SVTYPE=CNV;END=54777366;REFLEN=21077 GT:SM:CN:BC:PE 0/1:0.490971:1:17:15,20 -chr11 54929538 DRAGEN:GAIN:chr11:54929539-54937738 N <DUP> 27 cnvLength SVTYPE=CNV;END=54937738;REFLEN=8200 GT:SM:CN:BC:PE ./1:1.47291:3:7:23,27 -chr11 55117468 DRAGEN:LOSS:chr11:55117469-55124528 N <DEL> 27 cnvLength SVTYPE=CNV;END=55124528;REFLEN=7060 GT:SM:CN:BC:PE 0/1:0.539263:1:5:20,74 -chr11 55234062 DRAGEN:LOSS:chr11:55234063-55246555 N <DEL> 11 PASS SVTYPE=CNV;END=55246555;REFLEN=12493 GT:SM:CN:BC:PE 0/1:0.6596:1:6:9,83 -chr11 89231289 DRAGEN:LOSS:chr11:89231290-89234417 N <DEL> 60 cnvLength SVTYPE=CNV;END=89234417;REFLEN=3128 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:3:51,47 -chr11 96561174 DRAGEN:LOSS:chr11:96561175-96566395 N <DEL> 22 cnvLength SVTYPE=CNV;END=96566395;REFLEN=5221 GT:SM:CN:BC:PE 0/1:0.568531:1:4:6,7 -chr12 21355 DRAGEN:GAIN:chr12:21356-60453 N <DUP> 115 PASS SVTYPE=CNV;END=60453;REFLEN=39098 GT:SM:CN:BC:PE ./1:2.74283:6:7:0,17 -chr12 8404340 DRAGEN:LOSS:chr12:8404341-8406267 N <DEL> 20 cnvLength SVTYPE=CNV;END=8406267;REFLEN=1927 GT:SM:CN:BC:PE 0/1:0.517465:1:1:44,44 -chr12 8406267 DRAGEN:LOSS:chr12:8406268-8427879 N <DEL> 82 PASS SVTYPE=CNV;END=8427879;REFLEN=21612 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:7:44,0 -chr12 8864223 DRAGEN:LOSS:chr12:8864224-8865835 N <DEL> 25 cnvLength SVTYPE=CNV;END=8865835;REFLEN=1612 GT:SM:CN:BC:PE 0/1:0.273501:1:1:50,29 -chr12 9483131 DRAGEN:LOSS:chr12:9483132-9571424 N <DEL> 48 cnvBinSupportRatio SVTYPE=CNV;END=9571424;REFLEN=88293 GT:SM:CN:BC:PE 0/1:0.543957:1:12:3,13 -chr12 11077584 DRAGEN:LOSS:chr12:11077585-11086467 N <DEL> 14 cnvLength SVTYPE=CNV;END=11086467;REFLEN=8883 GT:SM:CN:BC:PE 0/1:0.637451:1:8:18,20 -chr12 11086467 DRAGEN:LOSS:chr12:11086468-11097740 N <DEL> 72 PASS SVTYPE=CNV;END=11097740;REFLEN=11273 GT:SM:CN:BC:PE 1/1:0.0222744:0:6:20,40 -chr12 11356471 DRAGEN:GAIN:chr12:11356472-11391383 N <DUP> 86 PASS SVTYPE=CNV;END=11391383;REFLEN=34912 GT:SM:CN:BC:PE ./1:2.10995:4:22:4,4 -chr12 11396974 DRAGEN:LOSS:chr12:11396975-11415257 N <DEL> 43 PASS SVTYPE=CNV;END=11415257;REFLEN=18283 GT:SM:CN:BC:PE 0/1:0.406345:1:13:2,5 -chr12 15454440 DRAGEN:LOSS:chr12:15454441-15459644 N <DEL> 27 cnvLength SVTYPE=CNV;END=15459644;REFLEN=5204 GT:SM:CN:BC:PE 0/1:0.515873:1:5:26,25 -chr12 16266234 DRAGEN:LOSS:chr12:16266235-16268354 N <DEL> 26 cnvLength SVTYPE=CNV;END=16268354;REFLEN=2120 GT:SM:CN:BC:PE 0/1:0.160807:1:2:54,52 -chr12 29691217 DRAGEN:LOSS:chr12:29691218-29694285 N <DEL> 26 cnvLength SVTYPE=CNV;END=29694285;REFLEN=3068 GT:SM:CN:BC:PE 0/1:0.484127:1:3:28,27 -chr12 33147246 DRAGEN:LOSS:chr12:33147247-33154442 N <DEL> 26 cnvLength SVTYPE=CNV;END=33154442;REFLEN=7196 GT:SM:CN:BC:PE 0/1:0.549476:1:6:2,16 -chr12 40488197 DRAGEN:LOSS:chr12:40488198-40489685 N <DEL> 52 cnvLength SVTYPE=CNV;END=40489685;REFLEN=1488 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:6,42 -chr12 45508891 DRAGEN:LOSS:chr12:45508892-45516759 N <DEL> 23 cnvLength SVTYPE=CNV;END=45516759;REFLEN=7868 GT:SM:CN:BC:PE 0/1:0.575859:1:7:29,26 -chr12 60127665 DRAGEN:LOSS:chr12:60127666-60130833 N <DEL> 60 cnvLength SVTYPE=CNV;END=60130833;REFLEN=3168 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:3:36,35 -chr12 71208215 DRAGEN:LOSS:chr12:71208216-71210483 N <DEL> 23 cnvLength SVTYPE=CNV;END=71210483;REFLEN=2268 GT:SM:CN:BC:PE 0/1:0.498415:1:2:22,23 -chr12 71962570 DRAGEN:LOSS:chr12:71962571-71964010 N <DEL> 51 cnvLength SVTYPE=CNV;END=71964010;REFLEN=1440 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:26,46 -chr12 81745660 DRAGEN:LOSS:chr12:81745661-81750660 N <DEL> 27 cnvLength SVTYPE=CNV;END=81750660;REFLEN=5000 GT:SM:CN:BC:PE 0/1:0.515117:1:5:22,25 -chr12 84198966 DRAGEN:LOSS:chr12:84198967-84201966 N <DEL> 59 cnvLength SVTYPE=CNV;END=84201966;REFLEN=3000 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:3:53,47 -chr12 95616322 DRAGEN:LOSS:chr12:95616323-95618886 N <DEL> 19 cnvLength SVTYPE=CNV;END=95618886;REFLEN=2564 GT:SM:CN:BC:PE 0/1:0.554068:1:2:36,36 -chr12 101708483 DRAGEN:LOSS:chr12:101708484-101712911 N <DEL> 23 cnvLength SVTYPE=CNV;END=101712911;REFLEN=4428 GT:SM:CN:BC:PE 0/1:0.544974:1:4:21,20 -chr12 111537603 DRAGEN:LOSS:chr12:111537604-111542414 N <DEL> 18 cnvLength SVTYPE=CNV;END=111542414;REFLEN=4811 GT:SM:CN:BC:PE 0/1:0.597614:1:4:33,73 -chr12 121513903 DRAGEN:LOSS:chr12:121513904-121516223 N <DEL> 18 cnvLength SVTYPE=CNV;END=121516223;REFLEN=2320 GT:SM:CN:BC:PE 0/1:0.562292:1:2:42,21 -chr12 122261003 DRAGEN:GAIN:chr12:122261004-122274797 N <DUP> 43 PASS SVTYPE=CNV;END=122274797;REFLEN=13794 GT:SM:CN:BC:PE ./1:1.64193:3:11:33,29 -chr12 124539962 DRAGEN:LOSS:chr12:124539963-124542086 N <DEL> 20 cnvLength SVTYPE=CNV;END=124542086;REFLEN=2124 GT:SM:CN:BC:PE 0/1:0.52694:1:2:31,29 -chr12 127123091 DRAGEN:LOSS:chr12:127123092-127125084 N <DEL> 30 cnvLength SVTYPE=CNV;END=127125084;REFLEN=1993 GT:SM:CN:BC:PE 1/1:0.134076:0:1:115,132 -chr12 128083004 DRAGEN:LOSS:chr12:128083005-128085892 N <DEL> 28 cnvLength SVTYPE=CNV;END=128085892;REFLEN=2888 GT:SM:CN:BC:PE 0/1:0.391808:1:2:8,28 -chr12 132091713 DRAGEN:LOSS:chr12:132091714-132095992 N <DEL> 21 cnvLength SVTYPE=CNV;END=132095992;REFLEN=4279 GT:SM:CN:BC:PE 0/1:0.563233:1:3:18,58 -chr12 132509442 DRAGEN:LOSS:chr12:132509443-132511729 N <DEL> 54 cnvLength SVTYPE=CNV;END=132511729;REFLEN=2287 GT:SM:CN:BC:PE 1/1:0.0282286:0:2:10,8 -chr13 18786403 DRAGEN:LOSS:chr13:18786404-18798236 N <DEL> 39 PASS SVTYPE=CNV;END=18798236;REFLEN=11833 GT:SM:CN:BC:PE 0/1:0.406345:1:3:9,7 -chr13 21476762 DRAGEN:LOSS:chr13:21476763-21480365 N <DEL> 25 cnvLength SVTYPE=CNV;END=21480365;REFLEN=3603 GT:SM:CN:BC:PE 0/1:0.507931:1:3:11,17 -chr13 22019381 DRAGEN:LOSS:chr13:22019382-22022971 N <DEL> 14 cnvLength SVTYPE=CNV;END=22022971;REFLEN=3590 GT:SM:CN:BC:PE 0/1:0.620844:1:3:8,7 -chr13 23058400 DRAGEN:LOSS:chr13:23058401-23062975 N <DEL> 25 cnvLength SVTYPE=CNV;END=23062975;REFLEN=4575 GT:SM:CN:BC:PE 0/1:0.526806:1:4:25,29 -chr13 26474791 DRAGEN:LOSS:chr13:26474792-26477887 N <DEL> 27 cnvLength SVTYPE=CNV;END=26477887;REFLEN=3096 GT:SM:CN:BC:PE 0/1:0.452182:1:3:35,30 -chr13 37498284 DRAGEN:LOSS:chr13:37498285-37511414 N <DEL> 37 PASS SVTYPE=CNV;END=37511414;REFLEN=13130 GT:SM:CN:BC:PE 0/1:0.478531:1:11:19,20 -chr13 41399286 DRAGEN:LOSS:chr13:41399287-41401032 N <DEL> 42 cnvLength SVTYPE=CNV;END=41401032;REFLEN=1746 GT:SM:CN:BC:PE 1/1:0.0774743:0:1:22,21 -chr13 48958920 DRAGEN:LOSS:chr13:48958921-48962320 N <DEL> 23 cnvLength SVTYPE=CNV;END=48962320;REFLEN=3400 GT:SM:CN:BC:PE 0/1:0.527195:1:3:19,21 -chr13 50494891 DRAGEN:LOSS:chr13:50494892-50500279 N <DEL> 66 cnvLength SVTYPE=CNV;END=50500279;REFLEN=5388 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:5:37,44 -chr13 50500279 DRAGEN:LOSS:chr13:50500280-50501301 N <DEL> 22 cnvLength SVTYPE=CNV;END=50501301;REFLEN=1022 GT:SM:CN:BC:PE 0/1:0.357143:1:1:44,44 -chr13 71902602 DRAGEN:LOSS:chr13:71902603-71905696 N <DEL> 60 cnvLength SVTYPE=CNV;END=71905696;REFLEN=3094 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:3:43,45 -chr13 72318854 DRAGEN:LOSS:chr13:72318855-72324943 N <DEL> 22 cnvLength SVTYPE=CNV;END=72324943;REFLEN=6089 GT:SM:CN:BC:PE 0/1:0.575859:1:5:22,27 -chr13 86201272 DRAGEN:LOSS:chr13:86201273-86202734 N <DEL> 23 cnvLength SVTYPE=CNV;END=86202734;REFLEN=1462 GT:SM:CN:BC:PE 0/1:0.19867:1:1:18,14 -chr13 90210757 DRAGEN:LOSS:chr13:90210758-90211757 N <DEL> 48 cnvLength SVTYPE=CNV;END=90211757;REFLEN=1000 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:42,36 -chr13 90211757 DRAGEN:LOSS:chr13:90211758-90212757 N <DEL> 22 cnvLength SVTYPE=CNV;END=90212757;REFLEN=1000 GT:SM:CN:BC:PE 0/1:0.23521:1:1:36,43 -chr13 98601063 DRAGEN:LOSS:chr13:98601064-98606406 N <DEL> 17 cnvLength SVTYPE=CNV;END=98606406;REFLEN=5343 GT:SM:CN:BC:PE 0/1:0.606092:1:4:18,37 -chr13 101241138 DRAGEN:LOSS:chr13:101241139-101244374 N <DEL> 19 cnvLength SVTYPE=CNV;END=101244374;REFLEN=3236 GT:SM:CN:BC:PE 0/1:0.570446:1:3:19,20 -chr13 108294163 DRAGEN:LOSS:chr13:108294164-108299586 N <DEL> 29 cnvLength SVTYPE=CNV;END=108299586;REFLEN=5423 GT:SM:CN:BC:PE 0/1:0.494752:1:5:12,11 -chr13 109216023 DRAGEN:LOSS:chr13:109216024-109219727 N <DEL> 11 cnvLength SVTYPE=CNV;END=109219727;REFLEN=3704 GT:SM:CN:BC:PE 0/1:0.641653:1:3:19,37 -chr13 112275596 DRAGEN:LOSS:chr13:112275597-112277666 N <DEL> 26 cnvLength SVTYPE=CNV;END=112277666;REFLEN=2070 GT:SM:CN:BC:PE 0/1:0.273753:1:2:2,3 -chr13 112317296 DRAGEN:LOSS:chr13:112317297-112318774 N <DEL> 35 cnvLength SVTYPE=CNV;END=112318774;REFLEN=1478 GT:SM:CN:BC:PE 1/1:0.106558:0:1:5,5 -chr13 114154011 DRAGEN:LOSS:chr13:114154012-114156100 N <DEL> 27 cnvLength SVTYPE=CNV;END=114156100;REFLEN=2089 GT:SM:CN:BC:PE 0/1:0.330488:1:2:23,120 -chr14 16095815 DRAGEN:GAIN:chr14:16095816-16125493 N <DUP> 142 PASS SVTYPE=CNV;END=16125493;REFLEN=29678 GT:SM:CN:BC:PE ./1:3.61385:7:10:431,8 -chr14 18656545 DRAGEN:GAIN:chr14:18656546-18662386 N <DUP> 57 cnvLength SVTYPE=CNV;END=18662386;REFLEN=5841 GT:SM:CN:BC:PE ./1:1.9441:4:4:2,8 -chr14 19725008 DRAGEN:GAIN:chr14:19725009-19956408 N <DUP> 62 PASS SVTYPE=CNV;END=19956408;REFLEN=231400 GT:SM:CN:BC:PE ./1:1.48901:3:172:12,24 -chr14 21484570 DRAGEN:LOSS:chr14:21484571-21486269 N <DEL> 25 cnvLength SVTYPE=CNV;END=21486269;REFLEN=1699 GT:SM:CN:BC:PE 0/1:0.303086:1:1:35,32 -chr14 34044415 DRAGEN:LOSS:chr14:34044416-34045449 N <DEL> 26 cnvLength SVTYPE=CNV;END=34045449;REFLEN=1034 GT:SM:CN:BC:PE 1/1:0.140658:0:1:40,85 -chr14 37299747 DRAGEN:LOSS:chr14:37299748-37300807 N <DEL> 23 cnvLength SVTYPE=CNV;END=37300807;REFLEN=1060 GT:SM:CN:BC:PE 0/1:0.281704:1:1:29,29 -chr14 37300807 DRAGEN:LOSS:chr14:37300808-37301824 N <DEL> 48 cnvLength SVTYPE=CNV;END=37301824;REFLEN=1017 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:29,55 -chr14 37530936 DRAGEN:GAIN:chr14:37530937-37546632 N <DUP> 30 PASS SVTYPE=CNV;END=37546632;REFLEN=15696 GT:SM:CN:BC:PE ./1:1.44575:3:15:37,28 -chr14 49019945 DRAGEN:LOSS:chr14:49019946-49022945 N <DEL> 22 cnvLength SVTYPE=CNV;END=49022945;REFLEN=3000 GT:SM:CN:BC:PE 0/1:0.531214:1:3:17,35 -chr14 54243160 DRAGEN:LOSS:chr14:54243161-54247226 N <DEL> 24 cnvLength SVTYPE=CNV;END=54247226;REFLEN=4066 GT:SM:CN:BC:PE 0/1:0.531331:1:4:27,24 -chr14 63395378 DRAGEN:LOSS:chr14:63395379-63396459 N <DEL> 23 cnvLength SVTYPE=CNV;END=63396459;REFLEN=1081 GT:SM:CN:BC:PE 0/1:0.354319:1:1:32,44 -chr14 68135824 DRAGEN:LOSS:chr14:68135825-68137080 N <DEL> 23 cnvLength SVTYPE=CNV;END=68137080;REFLEN=1256 GT:SM:CN:BC:PE 0/1:0.230159:1:1:65,91 -chr14 70221059 DRAGEN:LOSS:chr14:70221060-70223059 N <DEL> 20 cnvLength SVTYPE=CNV;END=70223059;REFLEN=2000 GT:SM:CN:BC:PE 0/1:0.526252:1:2:40,36 -chr14 79639437 DRAGEN:LOSS:chr14:79639438-79648769 N <DEL> 32 cnvLength SVTYPE=CNV;END=79648769;REFLEN=9332 GT:SM:CN:BC:PE 0/1:0.507937:1:9:26,24 -chr14 82032712 DRAGEN:LOSS:chr14:82032713-82036718 N <DEL> 25 cnvLength SVTYPE=CNV;END=82036718;REFLEN=4006 GT:SM:CN:BC:PE 0/1:0.521256:1:4:20,19 -chr14 101781835 DRAGEN:LOSS:chr14:101781836-101783186 N <DEL> 23 cnvLength SVTYPE=CNV;END=101783186;REFLEN=1351 GT:SM:CN:BC:PE 0/1:0.253085:1:1:69,83 -chr14 105616868 DRAGEN:GAIN:chr14:105616869-105633798 N <DUP> 71 PASS SVTYPE=CNV;END=105633798;REFLEN=16930 GT:SM:CN:BC:PE ./1:1.96727:4:4:13,7 -chr14 105864139 DRAGEN:LOSS:chr14:105864140-105916105 N <DEL> 53 PASS SVTYPE=CNV;END=105916105;REFLEN=51966 GT:SM:CN:BC:PE 1/1:0.105926:0:42:16,5 -chr14 105916105 DRAGEN:LOSS:chr14:105916106-106113253 N <DEL> 59 PASS SVTYPE=CNV;END=106113253;REFLEN=197148 GT:SM:CN:BC:PE 0/1:0.366196:1:148:5,3 -chr14 106113253 DRAGEN:LOSS:chr14:106113254-106260711 N <DEL> 50 PASS SVTYPE=CNV;END=106260711;REFLEN=147458 GT:SM:CN:BC:PE 0/1:0.555556:1:103:3,7 -chr14 106718609 DRAGEN:LOSS:chr14:106718610-106760231 N <DEL> 91 PASS SVTYPE=CNV;END=106760231;REFLEN=41622 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:13:4,0 -chr15 20240418 DRAGEN:GAIN:chr15:20240419-20374974 N <DUP> 89 PASS SVTYPE=CNV;END=20374974;REFLEN=134556 GT:SM:CN:BC:PE ./1:1.8952:4:39:13,11 -chr15 20384690 DRAGEN:GAIN:chr15:20384691-20421447 N <DUP> 79 PASS SVTYPE=CNV;END=20421447;REFLEN=36757 GT:SM:CN:BC:PE ./1:1.95659:4:22:4,4 -chr15 20644607 DRAGEN:GAIN:chr15:20644608-21272449 N <DUP> 121 cnvBinSupportRatio SVTYPE=CNV;END=21272449;REFLEN=627842 GT:SM:CN:BC:PE ./1:2.02202:4:34:4,8 -chr15 24108636 DRAGEN:LOSS:chr15:24108637-24259987 N <DEL> 60 PASS SVTYPE=CNV;END=24259987;REFLEN=151351 GT:SM:CN:BC:PE 0/1:0.50358:1:78:3,1 -chr15 28455866 DRAGEN:GAIN:chr15:28455867-28463953 N <DUP> 65 cnvLength SVTYPE=CNV;END=28463953;REFLEN=8087 GT:SM:CN:BC:PE ./1:2.01933:4:6:6,12 -chr15 49252227 DRAGEN:LOSS:chr15:49252228-49257241 N <DEL> 22 cnvLength SVTYPE=CNV;END=49257241;REFLEN=5014 GT:SM:CN:BC:PE 0/1:0.560432:1:5:19,2 -chr15 72093381 DRAGEN:LOSS:chr15:72093382-72095731 N <DEL> 57 cnvLength SVTYPE=CNV;END=72095731;REFLEN=2350 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:2:33,30 -chr15 76591541 DRAGEN:LOSS:chr15:76591542-76602174 N <DEL> 33 PASS SVTYPE=CNV;END=76602174;REFLEN=10633 GT:SM:CN:BC:PE 0/1:0.510974:1:5:23,0 -chr15 77037885 DRAGEN:LOSS:chr15:77037886-77039919 N <DEL> 26 cnvLength SVTYPE=CNV;END=77039919;REFLEN=2034 GT:SM:CN:BC:PE 0/1:0.394686:1:2:92,14 -chr15 85512589 DRAGEN:LOSS:chr15:85512590-85515800 N <DEL> 12 cnvLength SVTYPE=CNV;END=85515800;REFLEN=3211 GT:SM:CN:BC:PE 0/1:0.632634:1:3:25,29 -chr15 98355719 DRAGEN:LOSS:chr15:98355720-98358019 N <DEL> 25 cnvLength SVTYPE=CNV;END=98358019;REFLEN=2300 GT:SM:CN:BC:PE 0/1:0.448275:1:2:28,38 -chr15 99030742 DRAGEN:LOSS:chr15:99030743-99033139 N <DEL> 27 cnvLength SVTYPE=CNV;END=99033139;REFLEN=2397 GT:SM:CN:BC:PE 0/1:0.325009:1:2:46,45 -chr15 99876386 DRAGEN:LOSS:chr15:99876387-99881181 N <DEL> 21 cnvLength SVTYPE=CNV;END=99881181;REFLEN=4795 GT:SM:CN:BC:PE 0/1:0.571231:1:4:22,1 -chr16 14955099 DRAGEN:LOSS:chr16:14955100-14956377 N <DEL> 50 cnvLength SVTYPE=CNV;END=14956377;REFLEN=1278 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:9,17 -chr16 14956377 DRAGEN:LOSS:chr16:14956378-15025520 N <DEL> 50 PASS SVTYPE=CNV;END=15025520;REFLEN=69143 GT:SM:CN:BC:PE 0/1:0.512905:1:10:17,20 -chr16 15029974 DRAGEN:LOSS:chr16:15029975-15147032 N <DEL> 104 PASS SVTYPE=CNV;END=15147032;REFLEN=117058 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:36:43,7 -chr16 16630673 DRAGEN:GAIN:chr16:16630674-16638388 N <DUP> 48 cnvLength SVTYPE=CNV;END=16638388;REFLEN=7715 GT:SM:CN:BC:PE ./1:1.80057:4:5:17,15 -chr16 21523927 DRAGEN:GAIN:chr16:21523928-21582340 N <DUP> 93 PASS SVTYPE=CNV;END=21582340;REFLEN=58413 GT:SM:CN:BC:PE ./1:2.11768:4:25:4,10 -chr16 22614198 DRAGEN:GAIN:chr16:22614199-22699294 N <DUP> 94 PASS SVTYPE=CNV;END=22699294;REFLEN=85096 GT:SM:CN:BC:PE ./1:2.0119:4:74:3,101 -chr16 23036171 DRAGEN:LOSS:chr16:23036172-23038171 N <DEL> 55 cnvLength SVTYPE=CNV;END=23038171;REFLEN=2000 GT:SM:CN:BC:PE 1/1:4.8885e-06:0:2:53,39 -chr16 25328342 DRAGEN:LOSS:chr16:25328343-25331450 N <DEL> 21 cnvLength SVTYPE=CNV;END=25331450;REFLEN=3108 GT:SM:CN:BC:PE 0/1:0.547003:1:3:30,18 -chr16 34061561 DRAGEN:GAIN:chr16:34061562-34065725 N <DUP> 51 cnvLength SVTYPE=CNV;END=34065725;REFLEN=4164 GT:SM:CN:BC:PE ./1:1.92063:4:3:739,1250 -chr16 34163416 DRAGEN:GAIN:chr16:34163417-34185511 N <DUP> 76 PASS SVTYPE=CNV;END=34185511;REFLEN=22095 GT:SM:CN:BC:PE ./1:1.99608:4:5:64,25 -chr16 35232011 DRAGEN:GAIN:chr16:35232012-35522512 N <DUP> 56 PASS SVTYPE=CNV;END=35522512;REFLEN=290501 GT:SM:CN:BC:PE ./1:1.43559:3:258:2,25 -chr16 36123036 DRAGEN:GAIN:chr16:36123037-36125764 N <DUP> 62 cnvLength SVTYPE=CNV;END=36125764;REFLEN=2728 GT:SM:CN:BC:PE ./1:2.20472:4:2:274,95 -chr16 46400702 DRAGEN:GAIN:chr16:46400703-46402358 N <DUP> 129 cnvLength SVTYPE=CNV;END=46402358;REFLEN=1656 GT:SM:CN:BC:PE ./1:91.2239:182:1:6010,6014 -chr16 48474158 DRAGEN:LOSS:chr16:48474159-48478054 N <DEL> 4 cnvLength SVTYPE=CNV;END=48478054;REFLEN=3896 GT:SM:CN:BC:PE 0/1:0.708285:1:3:14,22 -chr16 55762444 DRAGEN:LOSS:chr16:55762445-55787681 N <DEL> 42 PASS SVTYPE=CNV;END=55787681;REFLEN=25237 GT:SM:CN:BC:PE 0/1:0.498406:1:18:0,10 -chr16 55809358 DRAGEN:LOSS:chr16:55809359-55817468 N <DEL> 71 cnvLength SVTYPE=CNV;END=55817468;REFLEN=8110 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:6:3,5 -chr16 55817468 DRAGEN:LOSS:chr16:55817469-55820649 N <DEL> 24 cnvLength SVTYPE=CNV;END=55820649;REFLEN=3181 GT:SM:CN:BC:PE 0/1:0.513971:1:2:5,3 -chr16 55820649 DRAGEN:GAIN:chr16:55820650-55835022 N <DUP> 17 PASS SVTYPE=CNV;END=55835022;REFLEN=14373 GT:SM:CN:BC:PE ./1:1.34886:3:8:3,7 -chr16 58613042 DRAGEN:LOSS:chr16:58613043-58616857 N <DEL> 20 cnvLength SVTYPE=CNV;END=58616857;REFLEN=3815 GT:SM:CN:BC:PE 0/1:0.570844:1:3:25,26 -chr16 58638850 DRAGEN:LOSS:chr16:58638851-58644345 N <DEL> 27 cnvLength SVTYPE=CNV;END=58644345;REFLEN=5495 GT:SM:CN:BC:PE 0/1:0.524901:1:4:33,39 -chr16 70150110 DRAGEN:GAIN:chr16:70150111-70164381 N <DUP> 76 PASS SVTYPE=CNV;END=70164381;REFLEN=14271 GT:SM:CN:BC:PE ./1:2.12273:4:12:18,9 -chr16 74364064 DRAGEN:GAIN:chr16:74364065-74373443 N <DUP> 90 cnvLength SVTYPE=CNV;END=74373443;REFLEN=9379 GT:SM:CN:BC:PE ./1:2.48025:5:2:9,12 -chr16 75395308 DRAGEN:LOSS:chr16:75395309-75396776 N <DEL> 23 cnvLength SVTYPE=CNV;END=75396776;REFLEN=1468 GT:SM:CN:BC:PE 0/1:0.210987:1:1:39,59 -chr16 76505150 DRAGEN:LOSS:chr16:76505151-76509577 N <DEL> 64 cnvLength SVTYPE=CNV;END=76509577;REFLEN=4427 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:4:44,50 -chr16 76509577 DRAGEN:LOSS:chr16:76509578-76510577 N <DEL> 21 cnvLength SVTYPE=CNV;END=76510577;REFLEN=1000 GT:SM:CN:BC:PE 0/1:0.413645:1:1:50,48 -chr16 78337685 DRAGEN:LOSS:chr16:78337686-78351010 N <DEL> 37 PASS SVTYPE=CNV;END=78351010;REFLEN=13325 GT:SM:CN:BC:PE 0/1:0.490971:1:13:21,21 -chr16 84467183 DRAGEN:LOSS:chr16:84467184-84470759 N <DEL> 22 cnvLength SVTYPE=CNV;END=84470759;REFLEN=3576 GT:SM:CN:BC:PE 0/1:0.539683:1:3:16,27 -chr16 88078435 DRAGEN:LOSS:chr16:88078436-88082431 N <DEL> 9 cnvLength SVTYPE=CNV;END=88082431;REFLEN=3996 GT:SM:CN:BC:PE 0/1:0.656404:1:3:34,37 -chr16 89829062 DRAGEN:LOSS:chr16:89829063-89832567 N <DEL> 17 cnvLength SVTYPE=CNV;END=89832567;REFLEN=3505 GT:SM:CN:BC:PE 0/1:0.589934:1:3:30,30 -chr17 14286041 DRAGEN:LOSS:chr17:14286042-14288260 N <DEL> 25 cnvLength SVTYPE=CNV;END=14288260;REFLEN=2219 GT:SM:CN:BC:PE 0/1:0.196015:1:2:38,32 -chr17 21290258 DRAGEN:GAIN:chr17:21290259-21304502 N <DUP> 54 PASS SVTYPE=CNV;END=21304502;REFLEN=14244 GT:SM:CN:BC:PE ./1:1.80166:4:13:86,6 -chr17 21663136 DRAGEN:GAIN:chr17:21663137-21825807 N <DUP> 66 PASS SVTYPE=CNV;END=21825807;REFLEN=162671 GT:SM:CN:BC:PE ./1:1.62278:3:30:39,21 -chr17 21883884 DRAGEN:LOSS:chr17:21883885-21968030 N <DEL> 55 PASS SVTYPE=CNV;END=21968030;REFLEN=84146 GT:SM:CN:BC:PE 0/1:0.492063:1:71:643,734 -chr17 22122904 DRAGEN:GAIN:chr17:22122905-22158839 N <DUP> 111 PASS SVTYPE=CNV;END=22158839;REFLEN=35935 GT:SM:CN:BC:PE ./1:2.58731:5:29:72,75 -chr17 26809249 DRAGEN:GAIN:chr17:26809250-26825779 N <DUP> 14 PASS SVTYPE=CNV;END=26825779;REFLEN=16530 GT:SM:CN:BC:PE ./1:1.32259:3:12:430,414 -chr17 26865555 DRAGEN:GAIN:chr17:26865556-26867950 N <DUP> 73 cnvLength SVTYPE=CNV;END=26867950;REFLEN=2395 GT:SM:CN:BC:PE ./1:2.48527:5:2:719,844 -chr17 26878531 DRAGEN:GAIN:chr17:26878532-26989474 N <DUP> 62 cnvBinSupportRatio SVTYPE=CNV;END=26989474;REFLEN=110943 GT:SM:CN:BC:PE ./1:1.60317:3:11:1913,6 -chr17 32523950 DRAGEN:LOSS:chr17:32523951-32542324 N <DEL> 37 PASS SVTYPE=CNV;END=32542324;REFLEN=18374 GT:SM:CN:BC:PE 0/1:0.52044:1:16:32,32 -chr17 36109484 DRAGEN:GAIN:chr17:36109485-36155125 N <DUP> 51 PASS SVTYPE=CNV;END=36155125;REFLEN=45641 GT:SM:CN:BC:PE ./1:1.56349:3:39:29,8 -chr17 36187550 DRAGEN:LOSS:chr17:36187551-36459198 N <DEL> 56 cnvBinSupportRatio SVTYPE=CNV;END=36459198;REFLEN=271648 GT:SM:CN:BC:PE 0/1:0.554817:1:23:15,20 -chr17 41265352 DRAGEN:LOSS:chr17:41265353-41275380 N <DEL> 73 PASS SVTYPE=CNV;END=41275380;REFLEN=10028 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:9:17,15 -chr17 45574049 DRAGEN:LOSS:chr17:45574050-45584802 N <DEL> 29 PASS SVTYPE=CNV;END=45584802;REFLEN=10753 GT:SM:CN:BC:PE 0/1:0.547619:1:9:1,1 -chr17 46135514 DRAGEN:GAIN:chr17:46135515-46216829 N <DUP> 57 PASS SVTYPE=CNV;END=46216829;REFLEN=81315 GT:SM:CN:BC:PE ./1:1.56468:3:70:30,7 -chr17 46261197 DRAGEN:LOSS:chr17:46261198-46280394 N <DEL> 40 PASS SVTYPE=CNV;END=46280394;REFLEN=19197 GT:SM:CN:BC:PE 0/1:0.485372:1:14:3,6 -chr17 76365117 DRAGEN:LOSS:chr17:76365118-76368794 N <DEL> 22 cnvLength SVTYPE=CNV;END=76368794;REFLEN=3677 GT:SM:CN:BC:PE 0/1:0.547034:1:3:32,22 -chr18 5324168 DRAGEN:LOSS:chr18:5324169-5326408 N <DEL> 28 cnvLength SVTYPE=CNV;END=5326408;REFLEN=2240 GT:SM:CN:BC:PE 1/1:0.147751:0:2:34,35 -chr18 29594743 DRAGEN:LOSS:chr18:29594744-29596073 N <DEL> 49 cnvLength SVTYPE=CNV;END=29596073;REFLEN=1330 GT:SM:CN:BC:PE 1/1:0.0258248:0:1:22,23 -chr18 41284066 DRAGEN:LOSS:chr18:41284067-41287341 N <DEL> 60 cnvLength SVTYPE=CNV;END=41287341;REFLEN=3275 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:3:57,41 -chr18 41287341 DRAGEN:LOSS:chr18:41287342-41288522 N <DEL> 23 cnvLength SVTYPE=CNV;END=41288522;REFLEN=1181 GT:SM:CN:BC:PE 0/1:0.241461:1:1:41,47 -chr18 50167762 DRAGEN:LOSS:chr18:50167763-50171784 N <DEL> 20 cnvLength SVTYPE=CNV;END=50171784;REFLEN=4022 GT:SM:CN:BC:PE 0/1:0.56985:1:4:30,26 -chr18 57279436 DRAGEN:LOSS:chr18:57279437-57281436 N <DEL> 55 cnvLength SVTYPE=CNV;END=57281436;REFLEN=2000 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:2:37,36 -chr18 66056857 DRAGEN:LOSS:chr18:66056858-66064859 N <DEL> 32 cnvLength SVTYPE=CNV;END=66064859;REFLEN=8002 GT:SM:CN:BC:PE 0/1:0.498791:1:8:29,34 -chr18 66098923 DRAGEN:LOSS:chr18:66098924-66101923 N <DEL> 27 cnvLength SVTYPE=CNV;END=66101923;REFLEN=3000 GT:SM:CN:BC:PE 0/1:0.450727:1:3:30,38 -chr18 78902406 DRAGEN:LOSS:chr18:78902407-78906442 N <DEL> 25 cnvLength SVTYPE=CNV;END=78906442;REFLEN=4036 GT:SM:CN:BC:PE 0/1:0.51579:1:4:23,24 -chr19 566719 DRAGEN:LOSS:chr19:566720-571123 N <DEL> 31 cnvLength SVTYPE=CNV;END=571123;REFLEN=4404 GT:SM:CN:BC:PE 0/1:0.414425:1:2:0,77 -chr19 2909188 DRAGEN:LOSS:chr19:2909189-2910601 N <DEL> 49 cnvLength SVTYPE=CNV;END=2910601;REFLEN=1413 GT:SM:CN:BC:PE 1/1:0.023443:0:1:75,64 -chr19 4218094 DRAGEN:GAIN:chr19:4218095-4224855 N <DUP> 60 cnvLength SVTYPE=CNV;END=4224855;REFLEN=6761 GT:SM:CN:BC:PE ./1:1.96637:4:5:50,54 -chr19 12583350 DRAGEN:LOSS:chr19:12583351-12584828 N <DEL> 25 cnvLength SVTYPE=CNV;END=12584828;REFLEN=1478 GT:SM:CN:BC:PE 0/1:0.34383:1:1:39,36 -chr19 12584828 DRAGEN:LOSS:chr19:12584829-12587264 N <DEL> 57 cnvLength SVTYPE=CNV;END=12587264;REFLEN=2436 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:2:36,32 -chr19 14934619 DRAGEN:LOSS:chr19:14934620-14936115 N <DEL> 24 cnvLength SVTYPE=CNV;END=14936115;REFLEN=1496 GT:SM:CN:BC:PE 0/1:0.404762:1:1:111,48 -chr19 14936115 DRAGEN:LOSS:chr19:14936116-14938516 N <DEL> 57 cnvLength SVTYPE=CNV;END=14938516;REFLEN=2401 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:2:48,94 -chr19 24330586 DRAGEN:GAIN:chr19:24330587-24907579 N <DUP> 120 cnvBinSupportRatio SVTYPE=CNV;END=24907579;REFLEN=576993 GT:SM:CN:BC:PE ./1:2.04839:4:62:57,25 -chr19 27337379 DRAGEN:GAIN:chr19:27337380-27341354 N <DUP> 36 cnvLength SVTYPE=CNV;END=27341354;REFLEN=3975 GT:SM:CN:BC:PE ./1:1.69828:3:3:91,101 -chr19 27345304 DRAGEN:GAIN:chr19:27345305-27398490 N <DUP> 117 PASS SVTYPE=CNV;END=27398490;REFLEN=53186 GT:SM:CN:BC:PE ./1:2.71241:5:37:86,155 -chr19 27398490 DRAGEN:GAIN:chr19:27398491-27407583 N <DUP> 34 cnvLength SVTYPE=CNV;END=27407583;REFLEN=9093 GT:SM:CN:BC:PE ./1:1.54119:3:6:155,38 -chr19 27470034 DRAGEN:LOSS:chr19:27470035-27472518 N <DEL> 45 cnvLength SVTYPE=CNV;END=27472518;REFLEN=2484 GT:SM:CN:BC:PE 1/1:0.0788608:0:2:30,31 -chr19 35361421 DRAGEN:LOSS:chr19:35361422-35370444 N <DEL> 31 cnvLength SVTYPE=CNV;END=35370444;REFLEN=9023 GT:SM:CN:BC:PE 0/1:0.523165:1:8:0,0 -chr19 37850224 DRAGEN:LOSS:chr19:37850225-37854197 N <DEL> 13 cnvLength SVTYPE=CNV;END=37854197;REFLEN=3973 GT:SM:CN:BC:PE 0/1:0.625146:1:3:16,19 -chr19 44667152 DRAGEN:LOSS:chr19:44667153-44669749 N <DEL> 24 cnvLength SVTYPE=CNV;END=44669749;REFLEN=2597 GT:SM:CN:BC:PE 0/1:0.486765:1:2:7,25 -chr19 50902542 DRAGEN:LOSS:chr19:50902543-50905328 N <DEL> 27 cnvLength SVTYPE=CNV;END=50905328;REFLEN=2786 GT:SM:CN:BC:PE 0/1:0.265817:1:2:85,59 -chr19 51630700 DRAGEN:LOSS:chr19:51630701-51645485 N <DEL> 38 PASS SVTYPE=CNV;END=51645485;REFLEN=14785 GT:SM:CN:BC:PE 0/1:0.484488:1:13:2,0 -chr19 54051194 DRAGEN:LOSS:chr19:54051195-54056957 N <DEL> 28 cnvLength SVTYPE=CNV;END=54056957;REFLEN=5763 GT:SM:CN:BC:PE 0/1:0.507931:1:5:38,29 -chr19 54738520 DRAGEN:LOSS:chr19:54738521-54783368 N <DEL> 92 PASS SVTYPE=CNV;END=54783368;REFLEN=44848 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:10:15,3 -chr19 54785485 DRAGEN:LOSS:chr19:54785486-54790112 N <DEL> 22 cnvLength SVTYPE=CNV;END=54790112;REFLEN=4627 GT:SM:CN:BC:PE 0/1:0.563233:1:3:45,0 -chr19 54790112 DRAGEN:LOSS:chr19:54790113-54792159 N <DEL> 52 cnvLength SVTYPE=CNV;END=54792159;REFLEN=2047 GT:SM:CN:BC:PE 1/1:0.033605:0:2:0,2 -chr20 61182 DRAGEN:GAIN:chr20:61183-67509 N <DUP> 17 cnvLength SVTYPE=CNV;END=67509;REFLEN=6327 GT:SM:CN:BC:PE ./1:1.38525:3:5:1028,775 -chr20 1408351 DRAGEN:LOSS:chr20:1408352-1409439 N <DEL> 49 cnvLength SVTYPE=CNV;END=1409439;REFLEN=1088 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:46,56 -chr20 1409439 DRAGEN:LOSS:chr20:1409440-1410439 N <DEL> 22 cnvLength SVTYPE=CNV;END=1410439;REFLEN=1000 GT:SM:CN:BC:PE 0/1:0.327284:1:1:56,48 -chr20 1580151 DRAGEN:LOSS:chr20:1580152-1613199 N <DEL> 88 PASS SVTYPE=CNV;END=1613199;REFLEN=33048 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:25:15,15 -chr20 5647329 DRAGEN:LOSS:chr20:5647330-5650338 N <DEL> 26 cnvLength SVTYPE=CNV;END=5650338;REFLEN=3009 GT:SM:CN:BC:PE 0/1:0.474405:1:2:50,42 -chr20 15730162 DRAGEN:LOSS:chr20:15730163-15732479 N <DEL> 26 cnvLength SVTYPE=CNV;END=15732479;REFLEN=2317 GT:SM:CN:BC:PE 0/1:0.425687:1:2:36,61 -chr20 21305534 DRAGEN:LOSS:chr20:21305535-21307218 N <DEL> 53 cnvLength SVTYPE=CNV;END=21307218;REFLEN=1684 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:36,35 -chr20 21307218 DRAGEN:LOSS:chr20:21307219-21308467 N <DEL> 23 cnvLength SVTYPE=CNV;END=21308467;REFLEN=1249 GT:SM:CN:BC:PE 0/1:0.396825:1:1:35,47 -chr20 26316474 DRAGEN:LOSS:chr20:26316475-26321369 N <DEL> 65 cnvLength SVTYPE=CNV;END=26321369;REFLEN=4895 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:3:28,42 -chr20 28558287 DRAGEN:GAIN:chr20:28558288-28786092 N <DUP> 109 cnvBinSupportRatio SVTYPE=CNV;END=28786092;REFLEN=227805 GT:SM:CN:BC:PE ./1:2.125:4:23:13,190 -chr20 28803390 DRAGEN:GAIN:chr20:28803391-28873078 N <DUP> 59 PASS SVTYPE=CNV;END=28873078;REFLEN=69688 GT:SM:CN:BC:PE ./1:1.69597:3:18:40,66 -chr20 29055193 DRAGEN:GAIN:chr20:29055194-29124866 N <DUP> 119 PASS SVTYPE=CNV;END=29124866;REFLEN=69673 GT:SM:CN:BC:PE ./1:2.57345:5:10:23,31 -chr20 29243819 DRAGEN:GAIN:chr20:29243820-29296295 N <DUP> 52 PASS SVTYPE=CNV;END=29296295;REFLEN=52476 GT:SM:CN:BC:PE ./1:1.56534:3:26:14,11 -chr20 29313239 DRAGEN:GAIN:chr20:29313240-29340136 N <DUP> 64 PASS SVTYPE=CNV;END=29340136;REFLEN=26897 GT:SM:CN:BC:PE ./1:1.83825:4:12:14,19 -chr20 29375284 DRAGEN:GAIN:chr20:29375285-29420566 N <DUP> 32 PASS SVTYPE=CNV;END=29420566;REFLEN=45282 GT:SM:CN:BC:PE ./1:1.39865:3:24:47,27 -chr20 29865742 DRAGEN:GAIN:chr20:29865743-29893480 N <DUP> 89 PASS SVTYPE=CNV;END=29893480;REFLEN=27738 GT:SM:CN:BC:PE ./1:2.26798:5:11:16,182 -chr20 30411441 DRAGEN:GAIN:chr20:30411442-30462876 N <DUP> 39 PASS SVTYPE=CNV;END=30462876;REFLEN=51435 GT:SM:CN:BC:PE ./1:1.44021:3:8:26,59 -chr20 30812284 DRAGEN:GAIN:chr20:30812285-30840367 N <DUP> 127 PASS SVTYPE=CNV;END=30840367;REFLEN=28083 GT:SM:CN:BC:PE ./1:3.19048:6:11:17,31 -chr20 30921934 DRAGEN:GAIN:chr20:30921935-30944447 N <DUP> 88 PASS SVTYPE=CNV;END=30944447;REFLEN=22513 GT:SM:CN:BC:PE ./1:2.28583:5:7:43,51 -chr20 31053848 DRAGEN:GAIN:chr20:31053849-31074004 N <DUP> 150 PASS SVTYPE=CNV;END=31074004;REFLEN=20156 GT:SM:CN:BC:PE ./1:8.30264:17:6:2907,1938 -chr20 31184672 DRAGEN:GAIN:chr20:31184673-31187563 N <DUP> 66 cnvLength SVTYPE=CNV;END=31187563;REFLEN=2891 GT:SM:CN:BC:PE ./1:2.29375:5:2:2767,2720 -chr20 43643802 DRAGEN:LOSS:chr20:43643803-43645539 N <DEL> 53 cnvLength SVTYPE=CNV;END=43645539;REFLEN=1737 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:30,30 -chr20 63092508 DRAGEN:LOSS:chr20:63092509-63094701 N <DEL> 19 cnvLength SVTYPE=CNV;END=63094701;REFLEN=2193 GT:SM:CN:BC:PE 0/1:0.54352:1:2:69,53 -chr20 64092796 DRAGEN:LOSS:chr20:64092797-64095352 N <DEL> 27 cnvLength SVTYPE=CNV;END=64095352;REFLEN=2556 GT:SM:CN:BC:PE 0/1:0.255959:1:2:44,101 -chr21 5217636 DRAGEN:GAIN:chr21:5217637-9014460 N <DUP> 0 cnvQual SVTYPE=CNV;END=9014460;REFLEN=3796824 GT:SM:CN:BC:PE ./1:3.54458:7:48:17,14 -chr21 9653494 DRAGEN:GAIN:chr21:9653495-10272161 N <DUP> 127 cnvBinSupportRatio SVTYPE=CNV;END=10272161;REFLEN=618667 GT:SM:CN:BC:PE ./1:2.32867:5:41:6,111 -chr21 10324835 DRAGEN:GAIN:chr21:10324836-10467148 N <DUP> 150 cnvBinSupportRatio SVTYPE=CNV;END=10467148;REFLEN=142313 GT:SM:CN:BC:PE ./1:6.60545:13:20:51,16 -chr21 10510818 DRAGEN:GAIN:chr21:10510819-12990763 N <DUP> 124 cnvBinSupportRatio SVTYPE=CNV;END=12990763;REFLEN=2479945 GT:SM:CN:BC:PE ./1:1.90573:4:128:32,54 -chr21 17239070 DRAGEN:LOSS:chr21:17239071-17241446 N <DEL> 25 cnvLength SVTYPE=CNV;END=17241446;REFLEN=2376 GT:SM:CN:BC:PE 0/1:0.170587:1:2:45,44 -chr21 17953498 DRAGEN:LOSS:chr21:17953499-17957173 N <DEL> 28 cnvLength SVTYPE=CNV;END=17957173;REFLEN=3675 GT:SM:CN:BC:PE 0/1:0.452381:1:3:21,19 -chr21 44199493 DRAGEN:LOSS:chr21:44199494-44200631 N <DEL> 49 cnvLength SVTYPE=CNV;END=44200631;REFLEN=1138 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:1:0,0 -chr22 10711935 DRAGEN:GAIN:chr22:10711936-11067599 N <DUP> 150 cnvBinSupportRatio SVTYPE=CNV;END=11067599;REFLEN=355664 GT:SM:CN:BC:PE ./1:4.84262:10:20:8,70 -chr22 11307966 DRAGEN:GAIN:chr22:11307967-15938517 N <DUP> 135 cnvBinSupportRatio SVTYPE=CNV;END=15938517;REFLEN=4630551 GT:SM:CN:BC:PE ./1:1.92364:4:30:9,5 -chr22 18731265 DRAGEN:LOSS:chr22:18731266-18732759 N <DEL> 49 cnvLength SVTYPE=CNV;END=18732759;REFLEN=1494 GT:SM:CN:BC:PE 1/1:0.0331533:0:1:9,9 -chr22 19583264 DRAGEN:LOSS:chr22:19583265-19585791 N <DEL> 28 cnvLength SVTYPE=CNV;END=19585791;REFLEN=2527 GT:SM:CN:BC:PE 0/1:0.314613:1:2:33,69 -chr22 23234010 DRAGEN:LOSS:chr22:23234011-23236200 N <DEL> 25 cnvLength SVTYPE=CNV;END=23236200;REFLEN=2190 GT:SM:CN:BC:PE 0/1:0.449645:1:2:44,43 -chr22 23428465 DRAGEN:GAIN:chr22:23428466-23432224 N <DUP> 44 cnvLength SVTYPE=CNV;END=23432224;REFLEN=3759 GT:SM:CN:BC:PE ./1:1.82855:4:3:26,9 -chr22 23683235 DRAGEN:LOSS:chr22:23683236-23685235 N <DEL> 55 cnvLength SVTYPE=CNV;END=23685235;REFLEN=2000 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:2:55,43 -chr22 23932366 DRAGEN:LOSS:chr22:23932367-23946282 N <DEL> 40 PASS SVTYPE=CNV;END=23946282;REFLEN=13916 GT:SM:CN:BC:PE 0/1:0.421974:1:5:23,4 -chr22 29236423 DRAGEN:LOSS:chr22:29236424-29239546 N <DEL> 26 cnvLength SVTYPE=CNV;END=29239546;REFLEN=3123 GT:SM:CN:BC:PE 0/1:0.175864:1:2:70,52 -chr22 31380910 DRAGEN:LOSS:chr22:31380911-31384125 N <DEL> 60 cnvLength SVTYPE=CNV;END=31384125;REFLEN=3215 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:2:52,46 -chr22 36746792 DRAGEN:LOSS:chr22:36746793-36751150 N <DEL> 63 cnvLength SVTYPE=CNV;END=36751150;REFLEN=4358 GT:SM:CN:BC:PE 1/1:1.00369e-09:0:4:39,65 -chr22 42320387 DRAGEN:LOSS:chr22:42320388-42323710 N <DEL> 24 cnvLength SVTYPE=CNV;END=42323710;REFLEN=3323 GT:SM:CN:BC:PE 0/1:0.510072:1:3:23,82 -chrX 327784 DRAGEN:LOSS:chrX:327785-329399 N <DEL> 26 cnvLength SVTYPE=CNV;END=329399;REFLEN=1615 GT:SM:CN:BC:PE 1/1:0.150949:0:1:48,69 -chrX 975913 DRAGEN:LOSS:chrX:975914-978337 N <DEL> 28 cnvLength SVTYPE=CNV;END=978337;REFLEN=2424 GT:SM:CN:BC:PE 0/1:0.342165:1:2:33,69 -chrX 1166274 DRAGEN:LOSS:chrX:1166275-1182671 N <DEL> 41 PASS SVTYPE=CNV;END=1182671;REFLEN=16397 GT:SM:CN:BC:PE 0/1:0.351645:1:9:22,31 -chrX 5137101 DRAGEN:LOSS:chrX:5137102-5139130 N <DEL> 54 cnvLength SVTYPE=CNV;END=5139130;REFLEN=2029 GT:SM:CN:BC:PE 1:1.00369e-09:0:2:18,19 -chrX 34421912 DRAGEN:LOSS:chrX:34421913-34424508 N <DEL> 56 cnvLength SVTYPE=CNV;END=34424508;REFLEN=2596 GT:SM:CN:BC:PE 1:1.00369e-09:0:2:0,2 -chrX 57696712 DRAGEN:LOSS:chrX:57696713-57697807 N <DEL> 46 cnvLength SVTYPE=CNV;END=57697807;REFLEN=1095 GT:SM:CN:BC:PE 1:0.022804:0:1:0,29 -chrX 58488950 DRAGEN:LOSS:chrX:58488951-58498494 N <DEL> 71 cnvLength SVTYPE=CNV;END=58498494;REFLEN=9544 GT:SM:CN:BC:PE 1:1.00369e-09:0:5:2,13 -chrX 62761526 DRAGEN:GAIN:chrX:62761527-62771085 N <DUP> 56 cnvLength SVTYPE=CNV;END=62771085;REFLEN=9559 GT:SM:CN:BC:PE 1:1.8673:2:9:27,31 -chrX 75996647 DRAGEN:GAIN:chrX:75996648-76002528 N <DUP> 54 cnvLength SVTYPE=CNV;END=76002528;REFLEN=5881 GT:SM:CN:BC:PE 1:1.90476:2:5:0,1 -chrX 77865333 DRAGEN:LOSS:chrX:77865334-77867847 N <DEL> 56 cnvLength SVTYPE=CNV;END=77867847;REFLEN=2514 GT:SM:CN:BC:PE 1:9.70144e-06:0:2:23,16 -chrX 96808172 DRAGEN:LOSS:chrX:96808173-96809172 N <DEL> 43 cnvLength SVTYPE=CNV;END=96809172;REFLEN=1000 GT:SM:CN:BC:PE 1:0.0487332:0:1:38,32 -chrX 104003381 DRAGEN:GAIN:chrX:104003382-104050640 N <DUP> 88 PASS SVTYPE=CNV;END=104050640;REFLEN=47259 GT:SM:CN:BC:PE 1:2.04762:2:35:4,0 -chrX 115308311 DRAGEN:LOSS:chrX:115308312-115309311 N <DEL> 47 cnvLength SVTYPE=CNV;END=115309311;REFLEN=1000 GT:SM:CN:BC:PE 1:1.00369e-09:0:1:15,13 -chrX 115735984 DRAGEN:LOSS:chrX:115735985-115737909 N <DEL> 53 cnvLength SVTYPE=CNV;END=115737909;REFLEN=1925 GT:SM:CN:BC:PE 1:1.00369e-09:0:1:10,10 -chrX 119740347 DRAGEN:LOSS:chrX:119740348-119742168 N <DEL> 53 cnvLength SVTYPE=CNV;END=119742168;REFLEN=1821 GT:SM:CN:BC:PE 1:1.00369e-09:0:1:25,24 -chrX 129366304 DRAGEN:LOSS:chrX:129366305-129368317 N <DEL> 54 cnvLength SVTYPE=CNV;END=129368317;REFLEN=2013 GT:SM:CN:BC:PE 1:1.00369e-09:0:2:26,14 -chrX 141382259 DRAGEN:LOSS:chrX:141382260-141384533 N <DEL> 55 cnvLength SVTYPE=CNV;END=141384533;REFLEN=2274 GT:SM:CN:BC:PE 1:1.00369e-09:0:2:26,26 -chrX 143652805 DRAGEN:LOSS:chrX:143652806-143659126 N <DEL> 40 cnvLength SVTYPE=CNV;END=143659126;REFLEN=6321 GT:SM:CN:BC:PE 1:0.144084:0:2:0,1 -chrX 145340613 DRAGEN:LOSS:chrX:145340614-145342783 N <DEL> 54 cnvLength SVTYPE=CNV;END=145342783;REFLEN=2170 GT:SM:CN:BC:PE 1:1.00369e-09:0:2:8,6 -chrX 150759112 DRAGEN:LOSS:chrX:150759113-150760112 N <DEL> 45 cnvLength SVTYPE=CNV;END=150760112;REFLEN=1000 GT:SM:CN:BC:PE 1:0.0295694:0:1:23,40 -chrX 151124830 DRAGEN:LOSS:chrX:151124831-151127394 N <DEL> 18 cnvLength SVTYPE=CNV;END=151127394;REFLEN=2564 GT:SM:CN:BC:PE 1:0.224926:0:2:14,15 -chrX 155688504 DRAGEN:LOSS:chrX:155688505-155692183 N <DEL> 60 cnvLength SVTYPE=CNV;END=155692183;REFLEN=3679 GT:SM:CN:BC:PE 1:1.00369e-09:0:3:24,30 -chrY 3844269 DRAGEN:GAIN:chrY:3844270-3854396 N <DUP> 55 PASS SVTYPE=CNV;END=3854396;REFLEN=10127 GT:SM:CN:BC:PE 1:1.85714:2:9:12,2 -chrY 10659024 DRAGEN:GAIN:chrY:10659025-10693717 N <DUP> 79 PASS SVTYPE=CNV;END=10693717;REFLEN=34693 GT:SM:CN:BC:PE 1:1.96766:2:14:2544,460 -chrY 11108561 DRAGEN:GAIN:chrY:11108562-11117868 N <DUP> 116 cnvLength SVTYPE=CNV;END=11117868;REFLEN=9307 GT:SM:CN:BC:PE 1:3.54352:4:4:2,22 -chrY 11289947 DRAGEN:GAIN:chrY:11289948-11296309 N <DUP> 150 cnvLength SVTYPE=CNV;END=11296309;REFLEN=6362 GT:SM:CN:BC:PE 1:26.0609:26:5:708,2932 -chrY 11296309 DRAGEN:GAIN:chrY:11296310-11330116 N <DUP> 67 PASS SVTYPE=CNV;END=11330116;REFLEN=33807 GT:SM:CN:BC:PE 1:1.84192:2:23:2932,5446 -chrY 11530585 DRAGEN:GAIN:chrY:11530586-11539539 N <DUP> 150 cnvLength SVTYPE=CNV;END=11539539;REFLEN=8954 GT:SM:CN:BC:PE 1:16.6986:17:6:590,1076 -chrY 11744914 DRAGEN:GAIN:chrY:11744915-11748800 N <DUP> 57 cnvLength SVTYPE=CNV;END=11748800;REFLEN=3886 GT:SM:CN:BC:PE 1:2.03175:2:3:379,1108 -chrY 12512335 DRAGEN:LOSS:chrY:12512336-12514483 N <DEL> 6 cnvLength SVTYPE=CNV;END=12514483;REFLEN=2148 GT:SM:CN:BC:PE 1:0.284822:0:2:3,17
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input.vcf Sat Mar 01 11:57:27 2025 +0000 @@ -0,0 +1,72 @@ +##fileformat=VCFv4.2 +##fileDate=20250206 +##source=CNVkit v0.9.12 +##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END for imprecise variants"> +##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS for imprecise variants"> +##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record"> +##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation"> +##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Difference in length between REF and ALT alleles"> +##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant"> +##INFO=<ID=FOLD_CHANGE,Number=1,Type=Float,Description="Fold change"> +##INFO=<ID=FOLD_CHANGE_LOG,Number=1,Type=Float,Description="Log fold change"> +##INFO=<ID=PROBES,Number=1,Type=Integer,Description="Number of probes in CNV"> +##ALT=<ID=DEL,Description="Deletion"> +##ALT=<ID=DUP,Description="Duplication"> +##ALT=<ID=CNV,Description="Copy number variable region"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype quality"> +##FORMAT=<ID=CN,Number=1,Type=Integer,Description="Copy number genotype for imprecise events"> +##FORMAT=<ID=CNQ,Number=1,Type=Float,Description="Copy number genotype quality for imprecise events"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SampleID +chr17 63642 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=169340;SVLEN=-105698;FOLD_CHANGE=0.7464704212057787;FOLD_CHANGE_LOG=-0.421843;PROBES=5 GT:GQ 0/1:5 +chr17 171062 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=975994;SVLEN=-804932;FOLD_CHANGE=0.959723882595653;FOLD_CHANGE_LOG=-0.0593087;PROBES=76 GT:GQ 0/1:76 +chr17 976864 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=995090;SVLEN=-18226;FOLD_CHANGE=0.7835471517981237;FOLD_CHANGE_LOG=-0.351908;PROBES=5 GT:GQ 0/1:5 +chr17 1003876 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=1370635;SVLEN=-366759;FOLD_CHANGE=0.9559443899390699;FOLD_CHANGE_LOG=-0.0650014;PROBES=17 GT:GQ 0/1:17 +chr17 1370773 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=1371602;SVLEN=-829;FOLD_CHANGE=0.6795511253930977;FOLD_CHANGE_LOG=-0.557346;PROBES=4 GT:GQ 0/1:4 +chr17 1371696 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=7077386;SVLEN=-5705690;FOLD_CHANGE=0.9831802905897856;FOLD_CHANGE_LOG=-0.0244721;PROBES=1185 GT:GQ 0/1:1185 +chr17 7077456 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=7081882;SVLEN=-4426;FOLD_CHANGE=0.7017421863290814;FOLD_CHANGE_LOG=-0.510987;PROBES=6 GT:GQ 0/1:6 +chr17 7094026 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=15457143;SVLEN=-8363117;FOLD_CHANGE=0.9753768930200515;FOLD_CHANGE_LOG=-0.0359683;PROBES=1358 GT:GQ 0/1:1358 +chr17 15458595 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=15472344;SVLEN=-13749;FOLD_CHANGE=0.7204913424795425;FOLD_CHANGE_LOG=-0.472947;PROBES=3 GT:GQ 0/1:3 +chr17 15492288 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=15510997;SVLEN=-18709;FOLD_CHANGE=0.94346617461336;FOLD_CHANGE_LOG=-0.0839573;PROBES=7 GT:GQ 0/1:7 +chr17 15516014 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=15640837;SVLEN=-124823;FOLD_CHANGE=0.7449027533881352;FOLD_CHANGE_LOG=-0.424876;PROBES=22 GT:GQ 0/1:22 +chr17 15641310 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=16553058;SVLEN=-911748;FOLD_CHANGE=1.0300478798864319;FOLD_CHANGE_LOG=0.0427114;PROBES=104 GT:GQ 0/1:104 +chr17 16593714 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=16638957;SVLEN=-45243;FOLD_CHANGE=0.5908709597957374;FOLD_CHANGE_LOG=-0.759085;PROBES=12 GT:GQ 0/1:12 +chr17 16664738 . N <DUP> . . IMPRECISE;SVTYPE=DUP;END=16676023;SVLEN=11285;FOLD_CHANGE=1.2389448764191389;FOLD_CHANGE_LOG=0.309112;PROBES=5 GT:GQ:CN:CNQ 0/1:0:3:5 +chr17 16676810 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=17717724;SVLEN=-1040914;FOLD_CHANGE=1.0099897838199476;FOLD_CHANGE_LOG=0.0143407;PROBES=77 GT:GQ 0/1:77 +chr17 17717928 . N <DUP> . . IMPRECISE;SVTYPE=DUP;END=17718258;SVLEN=330;FOLD_CHANGE=1.2614622207412653;FOLD_CHANGE_LOG=0.335097;PROBES=2 GT:GQ:CN:CNQ 0/1:0:3:2 +chr17 17718534 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=17720032;SVLEN=-1498;FOLD_CHANGE=0.8080805421320396;FOLD_CHANGE_LOG=-0.307429;PROBES=4 GT:GQ 0/1:4 +chr17 17720271 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=18286901;SVLEN=-566630;FOLD_CHANGE=1.0054791111957748;FOLD_CHANGE_LOG=0.00788311;PROBES=225 GT:GQ 0/1:225 +chr17 18291532 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=18631071;SVLEN=-339539;FOLD_CHANGE=0.6628466290375354;FOLD_CHANGE_LOG=-0.593253;PROBES=27 GT:GQ 0/1:27 +chr17 18634382 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=18925457;SVLEN=-291075;FOLD_CHANGE=0.9647550528950727;FOLD_CHANGE_LOG=-0.0517654;PROBES=59 GT:GQ 0/1:59 +chr17 18927527 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=19187027;SVLEN=-259500;FOLD_CHANGE=0.5791757084985782;FOLD_CHANGE_LOG=-0.787927;PROBES=4 GT:GQ 0/1:4 +chr17 19213197 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=19290431;SVLEN=-77234;FOLD_CHANGE=1.0153379493336925;FOLD_CHANGE_LOG=0.02196;PROBES=28 GT:GQ 0/1:28 +chr17 19290462 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=19314775;SVLEN=-24313;FOLD_CHANGE=0.7125257214335718;FOLD_CHANGE_LOG=-0.488986;PROBES=2 GT:GQ 0/1:2 +chr17 19314942 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=20209395;SVLEN=-894453;FOLD_CHANGE=1.0129824643579048;FOLD_CHANGE_LOG=0.0186092;PROBES=122 GT:GQ 0/1:122 +chr17 20217288 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=20363756;SVLEN=-146468;FOLD_CHANGE=0.2056196432884299;FOLD_CHANGE_LOG=-2.28195;PROBES=10 GT:GQ 1/1:10 +chr17 20370744 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=22023462;SVLEN=-1652718;FOLD_CHANGE=0.9869532815807457;FOLD_CHANGE_LOG=-0.0189463;PROBES=40 GT:GQ 0/1:40 +chr17 25621421 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=34432035;SVLEN=-8810614;FOLD_CHANGE=1.0063912542057964;FOLD_CHANGE_LOG=0.00919129;PROBES=1168 GT:GQ 0/1:1168 +chr17 34432617 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=34848743;SVLEN=-416126;FOLD_CHANGE=0.08615987696725817;FOLD_CHANGE_LOG=-3.53684;PROBES=26 GT:GQ 1/1:26 +chr17 34849769 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=36099630;SVLEN=-1249861;FOLD_CHANGE=1.0166420433824157;FOLD_CHANGE_LOG=0.0238118;PROBES=193 GT:GQ 0/1:193 +chr17 36104531 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=36454592;SVLEN=-350061;FOLD_CHANGE=0.28542230754373005;FOLD_CHANGE_LOG=-1.80883;PROBES=14 GT:GQ 1/1:14 +chr17 36455316 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=39406437;SVLEN=-2951121;FOLD_CHANGE=0.9948720373067039;FOLD_CHANGE_LOG=-0.00741712;PROBES=661 GT:GQ 0/1:661 +chr17 39411637 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=39459103;SVLEN=-47466;FOLD_CHANGE=0.683827809625486;FOLD_CHANGE_LOG=-0.548295;PROBES=4 GT:GQ 0/1:4 +chr17 39463951 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=40369482;SVLEN=-905531;FOLD_CHANGE=0.9873504837918345;FOLD_CHANGE_LOG=-0.0183658;PROBES=323 GT:GQ 0/1:323 +chr17 40370168 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=40371860;SVLEN=-1692;FOLD_CHANGE=0.7057210754625698;FOLD_CHANGE_LOG=-0.50283;PROBES=4 GT:GQ 0/1:4 +chr17 40375399 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=40447811;SVLEN=-72412;FOLD_CHANGE=1.1111980710252125;FOLD_CHANGE_LOG=0.152116;PROBES=8 GT:GQ 0/1:8 +chr17 40451768 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=40452888;SVLEN=-1120;FOLD_CHANGE=0.6524381281566785;FOLD_CHANGE_LOG=-0.616087;PROBES=3 GT:GQ 0/1:3 +chr17 40453292 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=44145033;SVLEN=-3691741;FOLD_CHANGE=0.9970208844681734;FOLD_CHANGE_LOG=-0.00430437;PROBES=916 GT:GQ 0/1:916 +chr17 44159806 . N <DUP> . . IMPRECISE;SVTYPE=DUP;END=44172067;SVLEN=12261;FOLD_CHANGE=1.428500954243693;FOLD_CHANGE_LOG=0.514502;PROBES=2 GT:GQ:CN:CNQ 0/1:0:3:2 +chr17 44248220 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=44788485;SVLEN=-540265;FOLD_CHANGE=0.24905391591000614;FOLD_CHANGE_LOG=-2.00547;PROBES=29 GT:GQ 1/1:29 +chr17 44791218 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=45016126;SVLEN=-224908;FOLD_CHANGE=1.0038784515470944;FOLD_CHANGE_LOG=0.0055846;PROBES=21 GT:GQ 0/1:21 +chr17 45017920 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=45137515;SVLEN=-119595;FOLD_CHANGE=0.5868863260265956;FOLD_CHANGE_LOG=-0.768847;PROBES=6 GT:GQ 0/1:6 +chr17 45198300 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=57650596;SVLEN=-12452296;FOLD_CHANGE=1.0082919287963463;FOLD_CHANGE_LOG=0.0119134;PROBES=1206 GT:GQ 0/1:1206 +chr17 57651100 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=57676844;SVLEN=-25744;FOLD_CHANGE=0.51403339693734;FOLD_CHANGE_LOG=-0.960066;PROBES=10 GT:GQ 1/1:10 +chr17 57679882 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=61899528;SVLEN=-4219646;FOLD_CHANGE=1.0130135699005758;FOLD_CHANGE_LOG=0.0186535;PROBES=517 GT:GQ 0/1:517 +chr17 61901176 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=61901771;SVLEN=-595;FOLD_CHANGE=0.6646574944113218;FOLD_CHANGE_LOG=-0.589317;PROBES=3 GT:GQ 0/1:3 +chr17 61901996 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=61916041;SVLEN=-14045;FOLD_CHANGE=0.9795525528106097;FOLD_CHANGE_LOG=-0.0298052;PROBES=34 GT:GQ 0/1:34 +chr17 61949485 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=61950974;SVLEN=-1489;FOLD_CHANGE=0.6435593021910756;FOLD_CHANGE_LOG=-0.635855;PROBES=5 GT:GQ 0/1:5 +chr17 61957592 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=61959161;SVLEN=-1569;FOLD_CHANGE=0.9555894293342413;FOLD_CHANGE_LOG=-0.0655372;PROBES=4 GT:GQ 0/1:4 +chr17 61972381 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=61973871;SVLEN=-1490;FOLD_CHANGE=0.5087846322344922;FOLD_CHANGE_LOG=-0.974873;PROBES=5 GT:GQ 1/1:5 +chr17 61987070 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=79991705;SVLEN=-18004635;FOLD_CHANGE=0.9953613201986847;FOLD_CHANGE_LOG=-0.00670777;PROBES=2428 GT:GQ 0/1:2428 +chr17 79993835 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=79994519;SVLEN=-684;FOLD_CHANGE=0.7454890153916679;FOLD_CHANGE_LOG=-0.423741;PROBES=4 GT:GQ 0/1:4 +chr17 79994596 . N <DEL> . . IMPRECISE;SVTYPE=DEL;END=81052320;SVLEN=-1057724;FOLD_CHANGE=1.003457350653;FOLD_CHANGE_LOG=0.0049793;PROBES=239 GT:GQ 0/1:239
--- a/test-data/output.json Wed Jul 24 12:56:03 2024 +0000 +++ b/test-data/output.json Sat Mar 01 11:57:27 2025 +0000 @@ -1,13004 +1,1094 @@ [ { - "biosampleId": "HG00096", - "assemblyId": "GRCh38", - "variantInternalId": "chr1:2650427-2651463:EFO:0030069", - "variantState": { - "id": "EFO:0030069", - "label": "complete genomic loss" - }, - "definitions": { - "Location": { - "start": 2650427, - "end": 2651463, - "chromosome": "1" - } - }, - "info": { - "legacyId": "DRAGEN:LOSS:chr1:2650428-2651463", - "cnCount": 0, - "cnValue": 1.00369e-09 - }, - "updated": "2024-07-24T09:24:38.692461" - }, - { - "biosampleId": "HG00096", - "assemblyId": "GRCh38", - "variantInternalId": "chr1:2651463-2653075:EFO:0030068", - "variantState": { - "id": "EFO:0030068", - "label": "low-level loss" - }, - "definitions": { - "Location": { - "start": 2651463, - "end": 2653075, - "chromosome": "1" - } - }, - "info": { - "legacyId": "DRAGEN:LOSS:chr1:2651464-2653075", - "cnCount": 1, - "cnValue": 0.395524 - }, - "updated": "2024-07-24T09:24:38.692482" - }, - { - "biosampleId": "HG00096", - "assemblyId": "GRCh38", - "variantInternalId": "chr1:4063594-4067475:EFO:0030068", - "variantState": { - "id": "EFO:0030068", - "label": "low-level loss" - }, - "definitions": { - "Location": { - "start": 4063594, - "end": 4067475, - "chromosome": "1" - } - }, - "info": { - "legacyId": "DRAGEN:LOSS:chr1:4063595-4067475", - "cnCount": 1, - "cnValue": 0.429788 - }, - "updated": "2024-07-24T09:24:38.692495" - }, - { - "biosampleId": "HG00096", - "assemblyId": "GRCh38", - "variantInternalId": "chr1:6377770-6385660:EFO:0030068", - "variantState": { - "id": "EFO:0030068", - "label": "low-level loss" - }, - "definitions": { - "Location": { - "start": 6377770, - "end": 6385660, - "chromosome": "1" - } - }, - "info": { - "legacyId": "DRAGEN:LOSS:chr1:6377771-6385660", - "cnCount": 1, - "cnValue": 0.543097 - }, - "updated": "2024-07-24T09:24:38.692503" - }, - { - "biosampleId": "HG00096", - "assemblyId": "GRCh38", - "variantInternalId": "chr1:8143311-8150440:EFO:0030071", - "variantState": { - "id": "EFO:0030071", - "label": "low-level gain" - }, - "definitions": { - "Location": { - "start": 8143311, - "end": 8150440, - "chromosome": "1" - } - }, - "info": { - "legacyId": "DRAGEN:GAIN:chr1:8143312-8150440", - "cnCount": 3, - "cnValue": 1.42495 - }, - "updated": "2024-07-24T09:24:38.692512" - }, - { - "biosampleId": "HG00096", - "assemblyId": "GRCh38", - "variantInternalId": "chr1:13224579-13242034:EFO:0030071", - "variantState": { - "id": "EFO:0030071", - "label": "low-level gain" - }, - "definitions": { - "Location": { - "start": 13224579, - "end": 13242034, - "chromosome": "1" - } - }, - "info": { - "legacyId": "DRAGEN:GAIN:chr1:13224580-13242034", - "cnCount": 3, - "cnValue": 1.49181 - }, - "updated": "2024-07-24T09:24:38.692520" - }, - { - "biosampleId": "HG00096", - "assemblyId": "GRCh38", - "variantInternalId": "chr1:16605061-16646293:EFO:0030072", - "variantState": { - "id": "EFO:0030072", - "label": "high-level gain" - }, - "definitions": { - "Location": { - 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