comparison test-data/fasta_indexes.loc @ 0:98086253a782 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit c35b83e4b65b211377c9f616c77d7306da48a984
author iuc
date Sun, 14 May 2023 20:08:55 +0000
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-1:000000000000 0:98086253a782
1 #This is a sample file distributed with Galaxy that enables tools
2 #to use a directory of Samtools indexed sequences data files. You will need
3 #to create these data files and then create a fasta_indexes.loc file
4 #similar to this one (store it in this directory) that points to
5 #the directories in which those files are stored. The fasta_indexes.loc
6 #file has this format (white space characters are TAB characters):
7 #
8 # <unique_build_id> <dbkey> <display_name> <file_base_path>
9 #
10 #So, for example, if you had hg19 Canonical indexed stored in
11 #
12 # /depot/data2/galaxy/hg19/sam/,
13 #
14 #then the fasta_indexes.loc entry would look like this:
15 #
16 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /depot/data2/galaxy/hg19/sam/hg19canon.fa
17 #
18 #and your /depot/data2/galaxy/hg19/sam/ directory
19 #would contain hg19canon.fa and hg19canon.fa.fai files.
20 #
21 #Your fasta_indexes.loc file should include an entry per line for
22 #each index set you have stored. The file in the path does actually
23 #exist, but it should never be directly used. Instead, the name serves
24 #as a prefix for the index file. For example:
25 #
26 test_buildid hg17 test_displayname ${__HERE__}/genome.fasta