# HG changeset patch
# User iuc
# Date 1734134136 0
# Node ID 505e6bbaee59f9f6a8f18d948ea0236e45937963
# Parent  8f45832093b310c034070e2854f091184811da6b
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit 9d922676808c5f57e9c01b148eec6cc0a63c53e5

diff -r 8f45832093b3 -r 505e6bbaee59 autobin.xml
--- a/autobin.xml	Mon Apr 22 17:44:47 2024 +0000
+++ b/autobin.xml	Fri Dec 13 23:55:36 2024 +0000
@@ -93,20 +93,24 @@
     </outputs>
     <tests>
         <test expect_num_outputs="2">
-            <conditional name="reference_source">
-                <param name="ref_selector" value="history"/>
-                <param name="fasta" ftype="fasta" value="genome.fasta" />
-            </conditional>
+            <section name="advanced_settings">
+                <conditional name="reference_source">
+                    <param name="ref_selector" value="history"/>
+                    <param name="fasta" ftype="fasta" value="genome.fasta" />
+                </conditional>
+            </section>
             <param name="bams" ftype="bam" value="tumor.bam" />
             <param name="targets" ftype="bed" value="capture.bed" />
             <output name="out_capture_target" file="capture.target.bed" /> 
             <output name="out_capture_antitarget" file="capture.antitarget.bed" /> 
         </test>
         <test expect_num_outputs="2">
-            <conditional name="reference_source">
-                <param name="ref_selector" value="cached"/>
-                <param name="fasta" value="test_buildid"/>
-            </conditional>
+            <section name="advanced_settings">
+                <conditional name="reference_source">
+                    <param name="ref_selector" value="cached"/>
+                    <param name="fasta" value="test_buildid"/>
+                </conditional>
+            </section>
             <param name="bams" ftype="bam" value="tumor.bam" />
             <param name="targets" ftype="bed" value="capture.bed" />
             <output name="out_capture_target" file="capture.target.bed" /> 
diff -r 8f45832093b3 -r 505e6bbaee59 macros.xml
--- a/macros.xml	Mon Apr 22 17:44:47 2024 +0000
+++ b/macros.xml	Fri Dec 13 23:55:36 2024 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@TOOL_VERSION@">0.9.11</token>
     <xml name="requirements">
         <requirements>