Mercurial > repos > iuc > cnvkit_batch
diff test-data/tumor.targetcoverage.cnn @ 1:4653aeb60243 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit e927b17a345b18c1b51dc1b112db5129278dcd22
author | iuc |
---|---|
date | Fri, 29 Sep 2023 15:39:59 +0000 |
parents | e3bbe8171af9 |
children |
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--- a/test-data/tumor.targetcoverage.cnn Sun May 14 20:10:48 2023 +0000 +++ b/test-data/tumor.targetcoverage.cnn Fri Sep 29 15:39:59 2023 +0000 @@ -1,38 +1,62 @@ chromosome start end gene depth log2 -chrM 576 647 - 96.2958 6.5894 -chrM 647 1601 - 22.022 4.46087 -chrM 1601 1670 - 3.10145 1.63294 -chrM 1670 3229 - 1.6068 0.68419 -chrM 3229 3304 - 1.57333 0.653824 -chrM 3306 4262 - 1.8295 0.871448 -chrM 4262 4331 - 0 -20 -chrM 4328 4400 - 0.0972222 -3.36257 -chrM 4401 4469 - 1.82353 0.866733 -chrM 4469 5511 - 3.54127 1.82427 -chrM 5511 5579 - 3.20588 1.68072 +chrM 576 848 - 91.9926 6.52345 +chrM 848 1121 - 5.9011 2.56098 +chrM 1121 1394 - 1.4359 0.521953 +chrM 1394 1667 - 3.78022 1.91847 +chrM 1667 1940 - 1.80586 0.852687 +chrM 1940 2212 - 0.0404412 -4.62803 +chrM 2212 2485 - 1.65201 0.724226 +chrM 2485 2758 - 4.0696 2.02489 +chrM 2758 3031 - 0.717949 -0.478047 +chrM 3031 3304 - 1.33333 0.415037 +chrM 3306 3579 - 0.626374 -0.674905 +chrM 3579 3853 - 2.30292 1.20346 +chrM 3853 4126 - 2.74359 1.45606 +chrM 4126 4400 - 0.748175 -0.418552 +chrM 4401 4695 - 0.94898 -0.075551 +chrM 4695 4990 - 5.01695 2.32681 +chrM 4990 5284 - 1.73129 0.79185 +chrM 5284 5579 - 5.97966 2.58006 chrM 5586 5655 - 0 -20 chrM 5656 5729 - 0 -20 -chrM 5760 5826 - 1.06061 0.0848889 -chrM 5825 5891 - 2.5303 1.33931 -chrM 5903 7445 - 2.01297 1.00933 -chrM 7445 7514 - 1.85507 0.891476 -chrM 7517 7585 - 0.544118 -0.878009 -chrM 7585 8269 - 1.85088 0.888209 +chrM 5760 5891 - 1.79389 0.843094 +chrM 5903 6171 - 2.15299 1.10634 +chrM 6171 6440 - 2.02974 1.02129 +chrM 6440 6708 - 1.51493 0.599247 +chrM 6708 6977 - 2.03717 1.02657 +chrM 6977 7245 - 3.05597 1.61163 +chrM 7245 7514 - 1.24907 0.320855 +chrM 7517 7767 - 1.944 0.959028 +chrM 7767 8018 - 2.24701 1.16801 +chrM 8018 8269 - 1.00797 0.01145 chrM 8294 8364 - 0 -20 -chrM 8365 8572 - 0.623188 -0.68226 -chrM 8526 9207 - 2.88693 1.52954 -chrM 9206 9990 - 1.97194 0.979615 -chrM 9990 10058 - 0 -20 -chrM 10058 10404 - 1.11272 0.154086 -chrM 10404 10469 - 0 -20 -chrM 10469 10766 - 1.69024 0.757224 -chrM 10759 12137 - 2.3164 1.21188 -chrM 12137 12206 - 1.76812 0.822213 -chrM 12206 12265 - 0.152542 -2.71272 -chrM 12265 12336 - 0 -20 -chrM 12336 14148 - 2.15563 1.10811 -chrM 14148 14673 - 2.24762 1.1684 -chrM 14673 14742 - 8.5942 3.10336 -chrM 14746 15887 - 3.49167 1.80392 -chrM 15887 15953 - 0 -20 +chrM 8365 8630 - 1.0717 0.0998986 +chrM 8630 8896 - 2.07895 1.05585 +chrM 8896 9162 - 3.66165 1.8725 +chrM 9162 9427 - 3.60755 1.85102 +chrM 9427 9693 - 0.808271 -0.30709 +chrM 9693 9959 - 2.07143 1.05063 +chrM 9959 10224 - 0.00377358 -8.04985 +chrM 10224 10490 - 1.44361 0.52968 +chrM 10490 10756 - 1.82331 0.866559 +chrM 10756 11022 - 1.12406 0.168719 +chrM 11022 11287 - 4.27925 2.09736 +chrM 11287 11553 - 2.93609 1.5539 +chrM 11553 11819 - 1.06015 0.0842689 +chrM 11819 12084 - 2.40377 1.2653 +chrM 12084 12350 - 0.736842 -0.440573 +chrM 12350 12616 - 0.736842 -0.440573 +chrM 12616 12882 - 2.48872 1.3154 +chrM 12882 13147 - 4.50943 2.17295 +chrM 13147 13413 - 1.47368 0.559427 +chrM 13413 13679 - 2.95865 1.56494 +chrM 13679 13944 - 1.64906 0.721641 +chrM 13944 14210 - 0.890977 -0.166539 +chrM 14210 14476 - 2.21053 1.14439 +chrM 14476 14742 - 4.45489 2.15539 +chrM 14746 14987 - 8.14523 3.02596 +chrM 14987 15228 - 2.48133 1.31111 +chrM 15228 15470 - 1.11157 0.152599 +chrM 15470 15711 - 3.9751 1.99099 +chrM 15711 15953 - 0.809917 -0.304153 chrM 15955 16023 - 0 -20