Mercurial > repos > iuc > cnvkit_call

comparison test-data/reference.cnn @ 0:2120d778cfde draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit c35b83e4b65b211377c9f616c77d7306da48a984
author iuc
date Sun, 14 May 2023 20:08:32 +0000
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comparison
equal deleted inserted replaced
-1:000000000000 0:2120d778cfde
1 chromosome start end gene log2 depth gc rmask spread
2 chrM 576 848 - 2.75864 493.485 0.444853 4.08996
3 chrM 848 1121 - 0.525695 22.4469 0.428571 0.779395
4 chrM 1121 1394 - -0.84681 4.59341 0.483516 1.25548
5 chrM 1394 1667 - 0.38341 11.022 0.450549 0.568444
6 chrM 1667 1940 - -0.04005 7.45055 0.406593 0.0593781
7 chrM 1940 2212 - -1.22672 1.36029 0.411765 1.81873
8 chrM 2212 2485 - 0.21482 10.6081 0.388278 0.318492
9 chrM 2485 2758 - 0.64779 31.7436 0.479853 0.960413
10 chrM 2758 3031 - -0.27752 5.35531 0.457875 0.411451
11 chrM 3031 3304 - 0.359575 7.55678 0.424908 0.533106
12 chrM 3306 3579 - 0.03537 10.9817 0.509158 0.0524396
13 chrM 3579 3853 - 0.026615 12.719 0.485401 0.0394594
14 chrM 3853 4126 - 0 7.17949 0.450549 0
15 chrM 4126 4400 - -0.485607 1.65693 0.423358 0.719961
16 chrM 4401 4695 - -0.343535 5.18707 0.442177 0.509325
17 chrM 4695 4990 - 0.603865 17.7458 0.427119 0.89529
18 chrM 4990 5284 - -0.43303 5.94218 0.428571 0.64201
19 chrM 5284 5579 - 0.5605 20.8136 0.410169 0.830997
20 chrM 5586 5655 - -0.008305 9.37681 0.449275 0.012313
21 chrM 5656 5729 - -0.462405 4.76712 0.410959 0.685562
22 chrM 5760 5891 - 0.02536 10.5954 0.442748 0.0375987
23 chrM 5903 6171 - 0.008305 13.8097 0.473881 0.012313
24 chrM 6171 6440 - 0.19261 13.5353 0.498141 0.285564
25 chrM 6440 6708 - 0 11.3657 0.470149 0
26 chrM 6708 6977 - -0.132195 7.80669 0.457249 0.195992
27 chrM 6977 7245 - 0.107015 15.3321 0.458955 0.15866
28 chrM 7245 7514 - -0.50723 2.52045 0.420074 0.752019
29 chrM 7517 7767 - 0.316705 8.152 0.372 0.469547
30 chrM 7767 8018 - 0.49084 19.2311 0.501992 0.727719
31 chrM 8018 8269 - -0.371965 6.7251 0.446215 0.551475
32 chrM 8294 8364 - -11.0488 0 0.342857 16.381
33 chrM 8365 8630 - -0.331755 2.89811 0.426415 0.49186
34 chrM 8630 8896 - 0.13461 7.87594 0.406015 0.199573
35 chrM 8896 9162 - -0.03223 13.5451 0.466165 0.0477842
36 chrM 9162 9427 - -0.31024 9.68302 0.498113 0.459962
37 chrM 9427 9693 - -0.712625 3.43233 0.466165 1.05654
38 chrM 9693 9959 - -0.272205 5.87594 0.443609 0.403571
39 chrM 9959 10224 - -0.26954 3.59623 0.377358 0.39962
40 chrM 10224 10490 - -0.09971 2.99624 0.349624 0.14783
41 chrM 10490 10756 - -0.241135 7.1015 0.43985 0.357507
42 chrM 10756 11022 - -0.2582 4.00376 0.424812 0.382807
43 chrM 11022 11287 - 0.01037 11.2377 0.430189 0.0153746
44 chrM 11287 11553 - 0.06726 10.2932 0.443609 0.0997197
45 chrM 11553 11819 - 0 11.109 0.466165 0
46 chrM 11819 12084 - 0.28666 11.1509 0.441509 0.425002
47 chrM 12084 12350 - 0.40266 10.1353 0.417293 0.596984
48 chrM 12350 12616 - 0 9.23684 0.428571 0
49 chrM 12616 12882 - 0.16725 9.39474 0.406015 0.247965
50 chrM 12882 13147 - 0.13976 15.834 0.520755 0.207208
51 chrM 13147 13413 - -0.026615 8.90226 0.432331 0.0394594
52 chrM 13413 13679 - 0.00138 12.218 0.462406 0.00204599
53 chrM 13679 13944 - -0.82452 4.30943 0.467925 1.22243
54 chrM 13944 14210 - 0.317015 8.87218 0.413534 0.470006
55 chrM 14210 14476 - -0.24388 9.2218 0.477444 0.361576
56 chrM 14476 14742 - 0.87922 33.8872 0.383459 1.30353
57 chrM 14746 14987 - 0.43224 28.1369 0.481328 0.640839
58 chrM 14987 15228 - 0.289845 14.2531 0.46888 0.429724
59 chrM 15228 15470 - -0.008065 9.3719 0.466942 0.0119572
60 chrM 15470 15711 - 0.01195 11.2946 0.46473 0.0177171
61 chrM 15711 15953 - -0.03537 6.29752 0.404959 0.0524396
62 chrM 15955 16023 - 0 4.13235 0.323529 0