diff call.xml @ 2:0a5e2fc51dfb draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit e927b17a345b18c1b51dc1b112db5129278dcd22
author iuc
date Fri, 29 Sep 2023 15:40:43 +0000
parents cc56d01a0b36
children
line wrap: on
line diff
--- a/call.xml	Sun May 14 21:23:36 2023 +0000
+++ b/call.xml	Fri Sep 29 15:40:43 2023 +0000
@@ -4,6 +4,7 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="xrefs"/>
+    <expand macro="creators"/>
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[  
         ln -s '$input_sample_file' ./tumor.cns &&
@@ -71,7 +72,7 @@
             #end if
     ]]></command>
     <inputs>
-        <param name="input_sample_file" type="data" format="tabular" label="CNS file" help="" />
+        <param name="input_sample_file" type="data" format="tabular" label="CN segmentation calls cns file" help="" />
         <section name="additional_SNP_allelic_process" title="additional SNP b_allele frequencies process" expanded="false">
             <expand macro="additionally_SNP_process" />
         </section>
@@ -92,7 +93,7 @@
         </section>
     </inputs>
     <outputs>
-        <data name="out_sample_Bintest" format="tabular" label="${tool.name} on ${on_string}: Sample Bintest " from_work_dir="tumor.call.cns" />
+        <data name="out_sample_Bintest" format="tabular" label="${tool.name} on ${on_string}: Rounded absolute scale copy numbers integer (not log2 ratios)" from_work_dir="tumor.call.cns" />
     </outputs>
     <tests>
         <test expect_num_outputs="1">