Mercurial > repos > iuc > cnvkit_call

diff test-data/reference.cnn.1 @ 2:0a5e2fc51dfb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit e927b17a345b18c1b51dc1b112db5129278dcd22
author iuc
date Fri, 29 Sep 2023 15:40:43 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/reference.cnn.1	Fri Sep 29 15:40:43 2023 +0000
@@ -0,0 +1,62 @@
+chromosome	start	end	gene	log2	depth	gc	rmask	spread
+chrM	576	848	-	2.75864	493.485	0.444853		4.08996
+chrM	848	1121	-	0.525695	22.4469	0.428571		0.779395
+chrM	1121	1394	-	-0.84681	4.59341	0.483516		1.25548
+chrM	1394	1667	-	0.38341	11.022	0.450549		0.568444
+chrM	1667	1940	-	-0.04005	7.45055	0.406593		0.0593781
+chrM	1940	2212	-	-1.22672	1.36029	0.411765		1.81873
+chrM	2212	2485	-	0.21482	10.6081	0.388278		0.318492
+chrM	2485	2758	-	0.64779	31.7436	0.479853		0.960413
+chrM	2758	3031	-	-0.27752	5.35531	0.457875		0.411451
+chrM	3031	3304	-	0.359575	7.55678	0.424908		0.533106
+chrM	3306	3579	-	0.03537	10.9817	0.509158		0.0524396
+chrM	3579	3853	-	0.026615	12.719	0.485401		0.0394594
+chrM	3853	4126	-	0	7.17949	0.450549		0
+chrM	4126	4400	-	-0.485607	1.65693	0.423358		0.719961
+chrM	4401	4695	-	-0.343535	5.18707	0.442177		0.509325
+chrM	4695	4990	-	0.603865	17.7458	0.427119		0.89529
+chrM	4990	5284	-	-0.43303	5.94218	0.428571		0.64201
+chrM	5284	5579	-	0.5605	20.8136	0.410169		0.830997
+chrM	5586	5655	-	-0.008305	9.37681	0.449275		0.012313
+chrM	5656	5729	-	-0.462405	4.76712	0.410959		0.685562
+chrM	5760	5891	-	0.02536	10.5954	0.442748		0.0375987
+chrM	5903	6171	-	0.008305	13.8097	0.473881		0.012313
+chrM	6171	6440	-	0.19261	13.5353	0.498141		0.285564
+chrM	6440	6708	-	0	11.3657	0.470149		0
+chrM	6708	6977	-	-0.132195	7.80669	0.457249		0.195992
+chrM	6977	7245	-	0.107015	15.3321	0.458955		0.15866
+chrM	7245	7514	-	-0.50723	2.52045	0.420074		0.752019
+chrM	7517	7767	-	0.316705	8.152	0.372		0.469547
+chrM	7767	8018	-	0.49084	19.2311	0.501992		0.727719
+chrM	8018	8269	-	-0.371965	6.7251	0.446215		0.551475
+chrM	8294	8364	-	-11.0488	0	0.342857		16.381
+chrM	8365	8630	-	-0.331755	2.89811	0.426415		0.49186
+chrM	8630	8896	-	0.13461	7.87594	0.406015		0.199573
+chrM	8896	9162	-	-0.03223	13.5451	0.466165		0.0477842
+chrM	9162	9427	-	-0.31024	9.68302	0.498113		0.459962
+chrM	9427	9693	-	-0.712625	3.43233	0.466165		1.05654
+chrM	9693	9959	-	-0.272205	5.87594	0.443609		0.403571
+chrM	9959	10224	-	-0.26954	3.59623	0.377358		0.39962
+chrM	10224	10490	-	-0.09971	2.99624	0.349624		0.14783
+chrM	10490	10756	-	-0.241135	7.1015	0.43985		0.357507
+chrM	10756	11022	-	-0.2582	4.00376	0.424812		0.382807
+chrM	11022	11287	-	0.01037	11.2377	0.430189		0.0153746
+chrM	11287	11553	-	0.06726	10.2932	0.443609		0.0997197
+chrM	11553	11819	-	0	11.109	0.466165		0
+chrM	11819	12084	-	0.28666	11.1509	0.441509		0.425002
+chrM	12084	12350	-	0.40266	10.1353	0.417293		0.596984
+chrM	12350	12616	-	0	9.23684	0.428571		0
+chrM	12616	12882	-	0.16725	9.39474	0.406015		0.247965
+chrM	12882	13147	-	0.13976	15.834	0.520755		0.207208
+chrM	13147	13413	-	-0.026615	8.90226	0.432331		0.0394594
+chrM	13413	13679	-	0.00138	12.218	0.462406		0.00204599
+chrM	13679	13944	-	-0.82452	4.30943	0.467925		1.22243
+chrM	13944	14210	-	0.317015	8.87218	0.413534		0.470006
+chrM	14210	14476	-	-0.24388	9.2218	0.477444		0.361576
+chrM	14476	14742	-	0.87922	33.8872	0.383459		1.30353
+chrM	14746	14987	-	0.43224	28.1369	0.481328		0.640839
+chrM	14987	15228	-	0.289845	14.2531	0.46888		0.429724
+chrM	15228	15470	-	-0.008065	9.3719	0.466942		0.0119572
+chrM	15470	15711	-	0.01195	11.2946	0.46473		0.0177171
+chrM	15711	15953	-	-0.03537	6.29752	0.404959		0.0524396
+chrM	15955	16023	-	0	4.13235	0.323529		0