Mercurial > repos > iuc > cnvkit_call

diff test-data/tumor.targetcoverage.cnn @ 2:0a5e2fc51dfb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit e927b17a345b18c1b51dc1b112db5129278dcd22
author iuc
date Fri, 29 Sep 2023 15:40:43 +0000
parents 2120d778cfde
children
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--- a/test-data/tumor.targetcoverage.cnn	Sun May 14 21:23:36 2023 +0000
+++ b/test-data/tumor.targetcoverage.cnn	Fri Sep 29 15:40:43 2023 +0000
@@ -1,38 +1,62 @@
 chromosome	start	end	gene	depth	log2
-chrM	576	647	-	96.2958	6.5894
-chrM	647	1601	-	22.022	4.46087
-chrM	1601	1670	-	3.10145	1.63294
-chrM	1670	3229	-	1.6068	0.68419
-chrM	3229	3304	-	1.57333	0.653824
-chrM	3306	4262	-	1.8295	0.871448
-chrM	4262	4331	-	0	-20
-chrM	4328	4400	-	0.0972222	-3.36257
-chrM	4401	4469	-	1.82353	0.866733
-chrM	4469	5511	-	3.54127	1.82427
-chrM	5511	5579	-	3.20588	1.68072
+chrM	576	848	-	91.9926	6.52345
+chrM	848	1121	-	5.9011	2.56098
+chrM	1121	1394	-	1.4359	0.521953
+chrM	1394	1667	-	3.78022	1.91847
+chrM	1667	1940	-	1.80586	0.852687
+chrM	1940	2212	-	0.0404412	-4.62803
+chrM	2212	2485	-	1.65201	0.724226
+chrM	2485	2758	-	4.0696	2.02489
+chrM	2758	3031	-	0.717949	-0.478047
+chrM	3031	3304	-	1.33333	0.415037
+chrM	3306	3579	-	0.626374	-0.674905
+chrM	3579	3853	-	2.30292	1.20346
+chrM	3853	4126	-	2.74359	1.45606
+chrM	4126	4400	-	0.748175	-0.418552
+chrM	4401	4695	-	0.94898	-0.075551
+chrM	4695	4990	-	5.01695	2.32681
+chrM	4990	5284	-	1.73129	0.79185
+chrM	5284	5579	-	5.97966	2.58006
 chrM	5586	5655	-	0	-20
 chrM	5656	5729	-	0	-20
-chrM	5760	5826	-	1.06061	0.0848889
-chrM	5825	5891	-	2.5303	1.33931
-chrM	5903	7445	-	2.01297	1.00933
-chrM	7445	7514	-	1.85507	0.891476
-chrM	7517	7585	-	0.544118	-0.878009
-chrM	7585	8269	-	1.85088	0.888209
+chrM	5760	5891	-	1.79389	0.843094
+chrM	5903	6171	-	2.15299	1.10634
+chrM	6171	6440	-	2.02974	1.02129
+chrM	6440	6708	-	1.51493	0.599247
+chrM	6708	6977	-	2.03717	1.02657
+chrM	6977	7245	-	3.05597	1.61163
+chrM	7245	7514	-	1.24907	0.320855
+chrM	7517	7767	-	1.944	0.959028
+chrM	7767	8018	-	2.24701	1.16801
+chrM	8018	8269	-	1.00797	0.01145
 chrM	8294	8364	-	0	-20
-chrM	8365	8572	-	0.623188	-0.68226
-chrM	8526	9207	-	2.88693	1.52954
-chrM	9206	9990	-	1.97194	0.979615
-chrM	9990	10058	-	0	-20
-chrM	10058	10404	-	1.11272	0.154086
-chrM	10404	10469	-	0	-20
-chrM	10469	10766	-	1.69024	0.757224
-chrM	10759	12137	-	2.3164	1.21188
-chrM	12137	12206	-	1.76812	0.822213
-chrM	12206	12265	-	0.152542	-2.71272
-chrM	12265	12336	-	0	-20
-chrM	12336	14148	-	2.15563	1.10811
-chrM	14148	14673	-	2.24762	1.1684
-chrM	14673	14742	-	8.5942	3.10336
-chrM	14746	15887	-	3.49167	1.80392
-chrM	15887	15953	-	0	-20
+chrM	8365	8630	-	1.0717	0.0998986
+chrM	8630	8896	-	2.07895	1.05585
+chrM	8896	9162	-	3.66165	1.8725
+chrM	9162	9427	-	3.60755	1.85102
+chrM	9427	9693	-	0.808271	-0.30709
+chrM	9693	9959	-	2.07143	1.05063
+chrM	9959	10224	-	0.00377358	-8.04985
+chrM	10224	10490	-	1.44361	0.52968
+chrM	10490	10756	-	1.82331	0.866559
+chrM	10756	11022	-	1.12406	0.168719
+chrM	11022	11287	-	4.27925	2.09736
+chrM	11287	11553	-	2.93609	1.5539
+chrM	11553	11819	-	1.06015	0.0842689
+chrM	11819	12084	-	2.40377	1.2653
+chrM	12084	12350	-	0.736842	-0.440573
+chrM	12350	12616	-	0.736842	-0.440573
+chrM	12616	12882	-	2.48872	1.3154
+chrM	12882	13147	-	4.50943	2.17295
+chrM	13147	13413	-	1.47368	0.559427
+chrM	13413	13679	-	2.95865	1.56494
+chrM	13679	13944	-	1.64906	0.721641
+chrM	13944	14210	-	0.890977	-0.166539
+chrM	14210	14476	-	2.21053	1.14439
+chrM	14476	14742	-	4.45489	2.15539
+chrM	14746	14987	-	8.14523	3.02596
+chrM	14987	15228	-	2.48133	1.31111
+chrM	15228	15470	-	1.11157	0.152599
+chrM	15470	15711	-	3.9751	1.99099
+chrM	15711	15953	-	0.809917	-0.304153
 chrM	15955	16023	-	0	-20