Mercurial > repos > iuc > cnvkit_call

diff test-data/tumor.bintest.cns @ 0:2120d778cfde draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit c35b83e4b65b211377c9f616c77d7306da48a984
author iuc
date Sun, 14 May 2023 20:08:32 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/tumor.bintest.cns	Sun May 14 20:08:32 2023 +0000
@@ -0,0 +1,34 @@
+chromosome	start	end	gene	depth	log2	weight	probes	p_bintest
+chrM	1394	1667	-	3.78022	1.83095	0.659673	1	0.00305626
+chrM	1667	1940	-	1.80586	1.51502	0.947315	1	2.21288e-10
+chrM	2212	2485	-	1.65201	1.13169	0.859195	1	0.0043234
+chrM	3579	3853	-	2.30292	1.39081	0.949177	1	3.36615e-09
+chrM	3853	4126	-	2.74359	1.7165	0.950488	1	8.22011e-14
+chrM	5284	5579	-	5.97966	3.04522	0.33087	1	0.000409792
+chrM	5586	5655	-	0	-19.5746	0.90138	1	0
+chrM	5656	5729	-	0	-18.4148	0.481257	1	6.28915e-143
+chrM	5760	5891	-	1.79389	1.41828	0.927253	1	4.90435e-07
+chrM	5903	6171	-	2.15299	1.33821	0.949892	1	9.37152e-09
+chrM	6708	6977	-	2.03717	1.04921	0.91555	1	0.000589447
+chrM	6977	7245	-	3.05597	1.2395	0.927373	1	1.2045e-05
+chrM	7517	7767	-	1.944	1.55628	0.749834	1	0.00324207
+chrM	8365	8630	-	1.0717	1.55444	0.732013	1	0.00437839
+chrM	8630	8896	-	2.07895	1.36838	0.913995	1	9.21442e-06
+chrM	8896	9162	-	3.66165	1.94013	0.947786	1	1.58627e-16
+chrM	9162	9427	-	3.60755	2.19544	0.759338	1	2.06073e-05
+chrM	9693	9959	-	2.07143	1.61872	0.803258	1	0.000525673
+chrM	9959	10224	-	0.00377358	-7.0323	0.80602	1	2.93745e-56
+chrM	10224	10490	-	1.44361	1.44622	0.930173	1	1.59322e-07
+chrM	10490	10756	-	1.82331	1.58765	0.834811	1	0.000230056
+chrM	10756	11022	-	1.12406	2.10303	0.817954	1	2.62602e-06
+chrM	11022	11287	-	4.27925	2.56694	0.949534	1	3.32731e-29
+chrM	11287	11553	-	2.93609	1.75192	0.940891	1	3.45973e-12
+chrM	12616	12882	-	2.48872	1.20906	0.894503	1	0.000409792
+chrM	12882	13147	-	4.50943	1.65031	0.911105	1	1.1997e-07
+chrM	13147	13413	-	1.47368	0.874788	0.94844	1	0.000274482
+chrM	13413	13679	-	2.95865	1.34513	0.949837	1	8.56465e-09
+chrM	14210	14476	-	2.21053	1.53132	0.832178	1	0.000409792
+chrM	14746	14987	-	8.14523	2.66335	0.577696	1	0.00010697
+chrM	15470	15711	-	3.9751	2.55959	0.947021	1	8.98929e-28
+chrM	15711	15953	-	0.809917	0.743495	0.944938	1	0.00285344
+chrM	15955	16023	-	0	-19.8307	0.900795	1	0