Mercurial > repos > iuc > cnvkit_call

diff test-data/tumor.targetcoverage.cnn @ 0:2120d778cfde draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit c35b83e4b65b211377c9f616c77d7306da48a984
author iuc
date Sun, 14 May 2023 20:08:32 +0000
parents
children 0a5e2fc51dfb
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/tumor.targetcoverage.cnn	Sun May 14 20:08:32 2023 +0000
@@ -0,0 +1,38 @@
+chromosome	start	end	gene	depth	log2
+chrM	576	647	-	96.2958	6.5894
+chrM	647	1601	-	22.022	4.46087
+chrM	1601	1670	-	3.10145	1.63294
+chrM	1670	3229	-	1.6068	0.68419
+chrM	3229	3304	-	1.57333	0.653824
+chrM	3306	4262	-	1.8295	0.871448
+chrM	4262	4331	-	0	-20
+chrM	4328	4400	-	0.0972222	-3.36257
+chrM	4401	4469	-	1.82353	0.866733
+chrM	4469	5511	-	3.54127	1.82427
+chrM	5511	5579	-	3.20588	1.68072
+chrM	5586	5655	-	0	-20
+chrM	5656	5729	-	0	-20
+chrM	5760	5826	-	1.06061	0.0848889
+chrM	5825	5891	-	2.5303	1.33931
+chrM	5903	7445	-	2.01297	1.00933
+chrM	7445	7514	-	1.85507	0.891476
+chrM	7517	7585	-	0.544118	-0.878009
+chrM	7585	8269	-	1.85088	0.888209
+chrM	8294	8364	-	0	-20
+chrM	8365	8572	-	0.623188	-0.68226
+chrM	8526	9207	-	2.88693	1.52954
+chrM	9206	9990	-	1.97194	0.979615
+chrM	9990	10058	-	0	-20
+chrM	10058	10404	-	1.11272	0.154086
+chrM	10404	10469	-	0	-20
+chrM	10469	10766	-	1.69024	0.757224
+chrM	10759	12137	-	2.3164	1.21188
+chrM	12137	12206	-	1.76812	0.822213
+chrM	12206	12265	-	0.152542	-2.71272
+chrM	12265	12336	-	0	-20
+chrM	12336	14148	-	2.15563	1.10811
+chrM	14148	14673	-	2.24762	1.1684
+chrM	14673	14742	-	8.5942	3.10336
+chrM	14746	15887	-	3.49167	1.80392
+chrM	15887	15953	-	0	-20
+chrM	15955	16023	-	0	-20