Mercurial > repos > iuc > cnvkit_call
diff call.xml @ 4:978ddcbedd60 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit 9d922676808c5f57e9c01b148eec6cc0a63c53e5
| author | iuc |
|---|---|
| date | Sat, 14 Dec 2024 00:00:49 +0000 |
| parents | 0a5e2fc51dfb |
| children |
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--- a/call.xml Mon Apr 22 17:41:43 2024 +0000 +++ b/call.xml Sat Dec 14 00:00:49 2024 +0000 @@ -98,20 +98,28 @@ <tests> <test expect_num_outputs="1"> <param name="input_sample_file" ftype="tabular" value="tumor.cns" /> - <param name="zygosity_freq" value="0.25" /> - <param name="min_variant_depth" value="40" /> - <param name="purity" value="1" /> + <section name="additional_SNP_allelic_process"> + <param name="zygosity_freq" value="0.25" /> + <param name="min_variant_depth" value="40" /> + </section> + <section name="advanced_settings"> + <param name="purity" value="1" /> + </section> <output name="out_sample_Bintest"> <assert_contents><has_text_matching expression="chrM"/></assert_contents> </output> </test> <test expect_num_outputs="1"> - <conditional name="Sample_sex"> - <param name="sex" value="yes" /> - </conditional> + <section name="advanced_settings"> + <conditional name="Sample_sex"> + <param name="sex" value="yes" /> + </conditional> + <param name="purity" value="1" /> + </section> <param name="input_sample_file" ftype="tabular" value="tumor.cns" /> - <param name="min_variant_depth" value="40" /> - <param name="purity" value="1" /> + <section name="additional_SNP_allelic_process"> + <param name="min_variant_depth" value="40" /> + </section> <output name="out_sample_Bintest"> <assert_contents><has_text_matching expression="chrM"/></assert_contents> </output>