Mercurial > repos > iuc > cnvkit_call

changeset 4:978ddcbedd60 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit 9d922676808c5f57e9c01b148eec6cc0a63c53e5
author iuc
date Sat, 14 Dec 2024 00:00:49 +0000
parents ef7efbffb3ec
children
files call.xml macros.xml
diffstat 2 files changed, 17 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/call.xml	Mon Apr 22 17:41:43 2024 +0000
+++ b/call.xml	Sat Dec 14 00:00:49 2024 +0000
@@ -98,20 +98,28 @@
     <tests>
         <test expect_num_outputs="1">
             <param name="input_sample_file" ftype="tabular" value="tumor.cns" />
-            <param name="zygosity_freq" value="0.25" />
-            <param name="min_variant_depth" value="40" />
-            <param name="purity" value="1" />
+            <section name="additional_SNP_allelic_process">
+                <param name="zygosity_freq" value="0.25" />
+                <param name="min_variant_depth" value="40" />
+            </section>
+            <section name="advanced_settings">
+                <param name="purity" value="1" />
+            </section>
             <output name="out_sample_Bintest">
                 <assert_contents><has_text_matching expression="chrM"/></assert_contents>
             </output>
         </test>
         <test expect_num_outputs="1">
-            <conditional name="Sample_sex">
-                <param name="sex" value="yes" />
-            </conditional>
+            <section name="advanced_settings">
+                <conditional name="Sample_sex">
+                    <param name="sex" value="yes" />
+                </conditional>
+                <param name="purity" value="1" />
+            </section>
             <param name="input_sample_file" ftype="tabular" value="tumor.cns" />
-            <param name="min_variant_depth" value="40" />
-            <param name="purity" value="1" />
+            <section name="additional_SNP_allelic_process">
+                <param name="min_variant_depth" value="40" />
+            </section>
             <output name="out_sample_Bintest">
                 <assert_contents><has_text_matching expression="chrM"/></assert_contents>
             </output>
--- a/macros.xml	Mon Apr 22 17:41:43 2024 +0000
+++ b/macros.xml	Sat Dec 14 00:00:49 2024 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@TOOL_VERSION@">0.9.11</token>
     <xml name="requirements">
         <requirements>