Mercurial > repos > iuc > cnvkit_coverage
comparison coverage.xml @ 1:5602cbf1153b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit e927b17a345b18c1b51dc1b112db5129278dcd22
| author | iuc |
|---|---|
| date | Fri, 29 Sep 2023 15:41:04 +0000 |
| parents | 283ab3112eea |
| children |
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| 0:283ab3112eea | 1:5602cbf1153b |
|---|---|
| 2 <description>Calculate coverage in the given regions from BAM read depths</description> | 2 <description>Calculate coverage in the given regions from BAM read depths</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="xrefs"/> | 6 <expand macro="xrefs"/> |
| 7 <expand macro="creators"/> | |
| 7 <expand macro="requirements"/> | 8 <expand macro="requirements"/> |
| 8 <command detect_errors="exit_code"><![CDATA[ | 9 <command detect_errors="exit_code"><![CDATA[ |
| 9 ln -s '$input_bam_file' ./tumor.bam && | 10 ln -s '$input_bam_file' ./tumor.bam && |
| 10 ln -s '$input_interval_bed' ./capture.split.bed && | 11 ln -s '$input_interval_bed' ./capture.split.bed && |
| 11 #if $reference_source.fasta | 12 #if $reference_source.fasta |