Mercurial > repos > iuc > cnvkit_coverage

comparison test-data/tumor.targetcoverage.cnn @ 1:5602cbf1153b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit e927b17a345b18c1b51dc1b112db5129278dcd22
author iuc
date Fri, 29 Sep 2023 15:41:04 +0000
parents 283ab3112eea
children
comparison
equal deleted inserted replaced
0:283ab3112eea 1:5602cbf1153b
1 chromosome start end gene depth log2 1 chromosome start end gene depth log2
2 chrM 576 647 - 96.2958 6.5894 2 chrM 576 848 - 91.9926 6.52345
3 chrM 647 1601 - 22.022 4.46087 3 chrM 848 1121 - 5.9011 2.56098
4 chrM 1601 1670 - 3.10145 1.63294 4 chrM 1121 1394 - 1.4359 0.521953
5 chrM 1670 3229 - 1.6068 0.68419 5 chrM 1394 1667 - 3.78022 1.91847
6 chrM 3229 3304 - 1.57333 0.653824 6 chrM 1667 1940 - 1.80586 0.852687
7 chrM 3306 4262 - 1.8295 0.871448 7 chrM 1940 2212 - 0.0404412 -4.62803
8 chrM 4262 4331 - 0 -20 8 chrM 2212 2485 - 1.65201 0.724226
9 chrM 4328 4400 - 0.0972222 -3.36257 9 chrM 2485 2758 - 4.0696 2.02489
10 chrM 4401 4469 - 1.82353 0.866733 10 chrM 2758 3031 - 0.717949 -0.478047
11 chrM 4469 5511 - 3.54127 1.82427 11 chrM 3031 3304 - 1.33333 0.415037
12 chrM 5511 5579 - 3.20588 1.68072 12 chrM 3306 3579 - 0.626374 -0.674905
13 chrM 3579 3853 - 2.30292 1.20346
14 chrM 3853 4126 - 2.74359 1.45606
15 chrM 4126 4400 - 0.748175 -0.418552
16 chrM 4401 4695 - 0.94898 -0.075551
17 chrM 4695 4990 - 5.01695 2.32681
18 chrM 4990 5284 - 1.73129 0.79185
19 chrM 5284 5579 - 5.97966 2.58006
13 chrM 5586 5655 - 0 -20 20 chrM 5586 5655 - 0 -20
14 chrM 5656 5729 - 0 -20 21 chrM 5656 5729 - 0 -20
15 chrM 5760 5826 - 1.06061 0.0848889 22 chrM 5760 5891 - 1.79389 0.843094
16 chrM 5825 5891 - 2.5303 1.33931 23 chrM 5903 6171 - 2.15299 1.10634
17 chrM 5903 7445 - 2.01297 1.00933 24 chrM 6171 6440 - 2.02974 1.02129
18 chrM 7445 7514 - 1.85507 0.891476 25 chrM 6440 6708 - 1.51493 0.599247
19 chrM 7517 7585 - 0.544118 -0.878009 26 chrM 6708 6977 - 2.03717 1.02657
20 chrM 7585 8269 - 1.85088 0.888209 27 chrM 6977 7245 - 3.05597 1.61163
28 chrM 7245 7514 - 1.24907 0.320855
29 chrM 7517 7767 - 1.944 0.959028
30 chrM 7767 8018 - 2.24701 1.16801
31 chrM 8018 8269 - 1.00797 0.01145
21 chrM 8294 8364 - 0 -20 32 chrM 8294 8364 - 0 -20
22 chrM 8365 8572 - 0.623188 -0.68226 33 chrM 8365 8630 - 1.0717 0.0998986
23 chrM 8526 9207 - 2.88693 1.52954 34 chrM 8630 8896 - 2.07895 1.05585
24 chrM 9206 9990 - 1.97194 0.979615 35 chrM 8896 9162 - 3.66165 1.8725
25 chrM 9990 10058 - 0 -20 36 chrM 9162 9427 - 3.60755 1.85102
26 chrM 10058 10404 - 1.11272 0.154086 37 chrM 9427 9693 - 0.808271 -0.30709
27 chrM 10404 10469 - 0 -20 38 chrM 9693 9959 - 2.07143 1.05063
28 chrM 10469 10766 - 1.69024 0.757224 39 chrM 9959 10224 - 0.00377358 -8.04985
29 chrM 10759 12137 - 2.3164 1.21188 40 chrM 10224 10490 - 1.44361 0.52968
30 chrM 12137 12206 - 1.76812 0.822213 41 chrM 10490 10756 - 1.82331 0.866559
31 chrM 12206 12265 - 0.152542 -2.71272 42 chrM 10756 11022 - 1.12406 0.168719
32 chrM 12265 12336 - 0 -20 43 chrM 11022 11287 - 4.27925 2.09736
33 chrM 12336 14148 - 2.15563 1.10811 44 chrM 11287 11553 - 2.93609 1.5539
34 chrM 14148 14673 - 2.24762 1.1684 45 chrM 11553 11819 - 1.06015 0.0842689
35 chrM 14673 14742 - 8.5942 3.10336 46 chrM 11819 12084 - 2.40377 1.2653
36 chrM 14746 15887 - 3.49167 1.80392 47 chrM 12084 12350 - 0.736842 -0.440573
37 chrM 15887 15953 - 0 -20 48 chrM 12350 12616 - 0.736842 -0.440573
49 chrM 12616 12882 - 2.48872 1.3154
50 chrM 12882 13147 - 4.50943 2.17295
51 chrM 13147 13413 - 1.47368 0.559427
52 chrM 13413 13679 - 2.95865 1.56494
53 chrM 13679 13944 - 1.64906 0.721641
54 chrM 13944 14210 - 0.890977 -0.166539
55 chrM 14210 14476 - 2.21053 1.14439
56 chrM 14476 14742 - 4.45489 2.15539
57 chrM 14746 14987 - 8.14523 3.02596
58 chrM 14987 15228 - 2.48133 1.31111
59 chrM 15228 15470 - 1.11157 0.152599
60 chrM 15470 15711 - 3.9751 1.99099
61 chrM 15711 15953 - 0.809917 -0.304153
38 chrM 15955 16023 - 0 -20 62 chrM 15955 16023 - 0 -20