Mercurial > repos > iuc > cnvkit_diagram
comparison diagram.xml @ 3:27ecb3477d34 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit 9d922676808c5f57e9c01b148eec6cc0a63c53e5
| author | iuc |
|---|---|
| date | Fri, 13 Dec 2024 23:56:18 +0000 |
| parents | 697c61206f5f |
| children |
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| 2:cd407b016741 | 3:27ecb3477d34 |
|---|---|
| 55 <data name="out_diagram_file" format="pdf" label="${tool.name} on ${on_string}: diagram pdf file" from_work_dir="sample-diagram.pdf" /> | 55 <data name="out_diagram_file" format="pdf" label="${tool.name} on ${on_string}: diagram pdf file" from_work_dir="sample-diagram.pdf" /> |
| 56 </outputs> | 56 </outputs> |
| 57 <tests> | 57 <tests> |
| 58 <test expect_num_outputs="1"> | 58 <test expect_num_outputs="1"> |
| 59 <param name="input_cnr_file" ftype="tabular" value="tumor.cnr" /> | 59 <param name="input_cnr_file" ftype="tabular" value="tumor.cnr" /> |
| 60 <param name="segment" ftype="tabular" value="sample.cns" /> | 60 <section name="advanced_settings"> |
| 61 <param name="threshold" value="10" /> | 61 <param name="segment" ftype="tabular" value="sample.cns" /> |
| 62 <param name="male_reference" value="1" /> | 62 <param name="threshold" value="10" /> |
| 63 <param name="male_reference" value="1" /> | |
| 64 </section> | |
| 63 <output name="out_diagram_file" file="sample-diagram.pdf" ftype="pdf" compare="sim_size" > | 65 <output name="out_diagram_file" file="sample-diagram.pdf" ftype="pdf" compare="sim_size" > |
| 64 <assert_contents><has_size value="6000" delta="2000" /></assert_contents> | 66 <assert_contents><has_size value="6000" delta="2000" /></assert_contents> |
| 65 </output> | 67 </output> |
| 66 </test> | 68 </test> |
| 67 <test expect_num_outputs="1"> | 69 <test expect_num_outputs="1"> |
| 68 <conditional name="Sample_sex"> | |
| 69 <param name="sex" value="yes" /> | |
| 70 </conditional> | |
| 71 <param name="input_cnr_file" ftype="tabular" value="tumor.cnr" /> | 70 <param name="input_cnr_file" ftype="tabular" value="tumor.cnr" /> |
| 72 <param name="segment" ftype="tabular" value="sample.cns" /> | 71 <section name="advanced_settings"> |
| 73 <param name="threshold" value="10" /> | 72 <conditional name="Sample_sex"> |
| 74 <param name="male_reference" value="1" /> | 73 <param name="sex" value="yes" /> |
| 74 </conditional> | |
| 75 <param name="segment" ftype="tabular" value="sample.cns" /> | |
| 76 <param name="threshold" value="10" /> | |
| 77 <param name="male_reference" value="1" /> | |
| 78 </section> | |
| 75 <output name="out_diagram_file" file="sample-diagram.pdf" ftype="pdf" compare="sim_size" > | 79 <output name="out_diagram_file" file="sample-diagram.pdf" ftype="pdf" compare="sim_size" > |
| 76 <assert_contents><has_size value="6000" delta="2000" /></assert_contents> | 80 <assert_contents><has_size value="6000" delta="2000" /></assert_contents> |
| 77 </output> | 81 </output> |
| 78 </test> | 82 </test> |
| 79 </tests> | 83 </tests> |