comparison codeml.xml @ 5:dba114391c98 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/codeml commit 866bfa31d035d511ca31f82c8ebac0f1df36b6ac

4:f9cb3a4339c2

<tool name="codeML" id="codeml" version="@TOOL_VERSION@+galaxy2" profile="18.01">
    <description>
        Detects positive selection (paml package)
    </description>

    <macros>
        <import>macros.xml</import>
    </macros>

    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">paml</requirement>
    </requirements>

    <version_command><![CDATA[ codeml /dev/null 2>&1 | tail -1 ]]></version_command>

    <command><![CDATA[
cp '$codeml_ctl' '$ctl' &&
codeml '$codeml_ctl'
    ]]></command>

    <configfiles>
        <configfile name="codeml_ctl"><![CDATA[
      seqfile = $concat_nuc * sequence data file name
      outfile = run_codeml * main result file name
     treefile = $tree * tree structure file name

5:dba114391c98

<tool name="codeML" id="codeml" version="@TOOL_VERSION@+galaxy2" profile="18.01">
    <description>
        Detects positive selection (paml package)
    </description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <xrefs>
        <xref type="bio.tools">paml</xref>
    </xrefs>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">paml</requirement>
    </requirements>
    <version_command><![CDATA[ codeml /dev/null 2>&1 | tail -1 ]]></version_command>
    <command><![CDATA[
cp '$codeml_ctl' '$ctl' &&
codeml '$codeml_ctl'
    ]]></command>
    <configfiles>
        <configfile name="codeml_ctl"><![CDATA[
      seqfile = $concat_nuc * sequence data file name
      outfile = run_codeml * main result file name
     treefile = $tree * tree structure file name