# HG changeset patch
# User iuc
# Date 1577356455 18000
# Node ID 66228e9c29d954de91c9a5f9c40aa96ca85235a2
# Parent  ba71e26d5bdc4956e139716455213600ad3ca37a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/codeml commit 29dba85647adf75fd7276d5da0f3cc1b8eda23ea"

diff -r ba71e26d5bdc -r 66228e9c29d9 codeml.xml
--- a/codeml.xml	Wed May 02 05:44:08 2018 -0400
+++ b/codeml.xml	Thu Dec 26 05:34:15 2019 -0500
@@ -1,4 +1,4 @@
-<tool name="codeML" id="codeml" version="1.0">
+<tool name="codeML" id="codeml" version="@WRAPPER_VERSION@+galaxy1" profile="18.01">
     <description>
         Detects positive selection (paml package)
     </description>
@@ -8,15 +8,14 @@
     </macros>
 
     <requirements>
-        <requirement type="package" version="4.9">paml</requirement>
+        <requirement type="package" version="@WRAPPER_VERSION@">paml</requirement>
     </requirements>
 
     <version_command><![CDATA[ codeml /dev/null 2>&1 | tail -1 ]]></version_command>
 
     <command><![CDATA[
+cp '$codeml_ctl' '$ctl' &&
 codeml '$codeml_ctl'
-&&
-mv '$codeml_ctl' '$ctl'
     ]]></command>
 
     <configfiles>
diff -r ba71e26d5bdc -r 66228e9c29d9 macros.xml
--- a/macros.xml	Wed May 02 05:44:08 2018 -0400
+++ b/macros.xml	Thu Dec 26 05:34:15 2019 -0500
@@ -1,4 +1,5 @@
 <macros>
+    <token name="@WRAPPER_VERSION@">4.9</token>
     <xml name="FSsites_br0" >
         <param argument="NSsites" type="select" label="Site model ; fix_alpha !=1 and alpha !=0 are not compatible with NSsites !=0" >
             <option value="0" selected="true">0 : e.g. basic model if model=0</option>
@@ -23,4 +24,4 @@
             <option value="3">3 (Warning: only two branch type allowed for branch models)</option>
         </param>
     </xml>
-</macros>
\ No newline at end of file
+</macros>