Mercurial > repos > iuc > colabfold_alphafold
changeset 1:5f7a01f8ea28 draft default tip
planemo upload for repository https://github.com/sokrypton/ColabFold commit 9883d1cf9ac0bec839da6ebb12306cf96206fe9c
| author | iuc |
|---|---|
| date | Mon, 25 Mar 2024 17:57:44 +0000 |
| parents | 66cd8f416122 |
| children | |
| files | colabfold_alphafold.xml |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/colabfold_alphafold.xml Sun Mar 24 22:10:50 2024 +0000 +++ b/colabfold_alphafold.xml Mon Mar 25 17:57:44 2024 +0000 @@ -69,7 +69,7 @@ <param argument='--num-ensemble' label="Number of ensembles" type="integer" min="1" optional="true" help="Number of ensembles. The trunk of the network is run multiple times with different random choices for the MSA cluster centers. This can result in a better prediction at the cost of longer runtime."/> <param argument="--random-seed" label="Set seed" type="integer" min="0" optional="true"/> <param argument="--num-seeds" label="Number of seeds" type="integer" min="0" optional="true" help="Number of seeds to try iterated based on random seed"/> - <param argument="--num-models" label="Number of models to use for structure prediction" type="integer" min="1" max="5" help="Reducing the number of models speeds up the prediction but results in lower quality"/> + <param argument="--num-models" label="Number of models to use for structure prediction" type="integer" min="1" max="5" optional="true" help="Reducing the number of models speeds up the prediction but results in lower quality"/> <param name="max_msa" label="Max msa" type="select" help="Defines the ratio of max-seq to max-extra-seq for one run. Enable dropouts and increase the number of seeds to sample predictions from uncertainty of the model. Decrease to increase uncertainity"> <!-- <option value="auto">auto</option> --> <option value="512:1024">512:1024</option>