Mercurial > repos > iuc > colibread_commet

diff test-data/discosnpRAD/fasta.fa @ 4:8c53dc8b4adb draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 0ed02865f048ad7471ea79509c0e23162bc29166"
author iuc
date Mon, 17 Aug 2020 10:38:36 -0400
parents 291753bf4013
children
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--- a/test-data/discosnpRAD/fasta.fa	Wed Jan 22 17:28:24 2020 -0500
+++ b/test-data/discosnpRAD/fasta.fa	Mon Aug 17 10:38:36 2020 -0400
@@ -1,28 +1,28 @@
->SNP_higher_path_7|P_1:30_C/T,P_2:49_C/G|high|nb_pol_2|left_unitig_length_1|right_unitig_length_16|C1_49|Q1_0|G1_0/1:702,15,702|rank_0
-gATTGGATGCGAGCTTCTTTACCCGATCATACGTCCAGCGAAGGGATTAGCTGTCGTTAGGGCCCTAATTCCTGCCTGGAGcggacaacaaagtagt
->SNP_lower_path_7|P_1:30_C/T,P_2:49_C/G|high|nb_pol_2|left_unitig_length_1|right_unitig_length_16|C1_49|Q1_0|G1_0/1:702,15,702|rank_0
-gATTGGATGCGAGCTTCTTTACCCGATCATATGTCCAGCGAAGGGATTAGGTGTCGTTAGGGCCCTAATTCCTGCCTGGAGcggacaacaaagtagt
->SNP_higher_path_6|P_1:30_C/G|high|nb_pol_1|left_unitig_length_1|right_unitig_length_8|C1_49|Q1_0|G1_0/1:702,15,702|rank_0
-tATGATCGGGTAAAGAAGCTCGCATCCAATCCCTATTGACTAAGTAGGACACTAATTATCGGacgctccc
->SNP_lower_path_6|P_1:30_C/G|high|nb_pol_1|left_unitig_length_1|right_unitig_length_8|C1_49|Q1_0|G1_0/1:702,15,702|rank_0
-tATGATCGGGTAAAGAAGCTCGCATCCAATCGCTATTGACTAAGTAGGACACTAATTATCGGacgctccc
->SNP_higher_path_5|P_1:30_A/C|high|nb_pol_1|left_unitig_length_5|right_unitig_length_51|C1_44|Q1_0|G1_0/1:632,15,632|rank_0
+>SNP_higher_path_7|P_1:30_C/T,P_2:49_C/G|high|nb_pol_2|left_unitig_length_1|right_unitig_length_16|left_contig_length_40|right_contig_length_16|C1_49|Q1_0|G1_0/1:702,15,702|rank_0
+gggagcgtccgataattagtgtcctacttagtcaatagggATTGGATGCGAGCTTCTTTACCCGATCATACGTCCAGCGAAGGGATTAGCTGTCGTTAGGGCCCTAATTCCTGCCTGGAGcggacaacaaagtagt
+>SNP_lower_path_7|P_1:30_C/T,P_2:49_C/G|high|nb_pol_2|left_unitig_length_1|right_unitig_length_16|left_contig_length_40|right_contig_length_16|C1_49|Q1_0|G1_0/1:702,15,702|rank_0
+gggagcgtccgataattagtgtcctacttagtcaatagggATTGGATGCGAGCTTCTTTACCCGATCATATGTCCAGCGAAGGGATTAGGTGTCGTTAGGGCCCTAATTCCTGCCTGGAGcggacaacaaagtagt
+>SNP_higher_path_6|P_1:30_C/G|high|nb_pol_1|left_unitig_length_1|right_unitig_length_8|left_contig_length_67|right_contig_length_8|C1_49|Q1_0|G1_0/1:702,15,702|rank_0
+actactttgttgtccgctccaggcaggaattagggccctaacgacagctaatcccttcgctggacgtATGATCGGGTAAAGAAGCTCGCATCCAATCCCTATTGACTAAGTAGGACACTAATTATCGGacgctccc
+>SNP_lower_path_6|P_1:30_C/G|high|nb_pol_1|left_unitig_length_1|right_unitig_length_8|left_contig_length_67|right_contig_length_8|C1_49|Q1_0|G1_0/1:702,15,702|rank_0
+actactttgttgtccgctccaggcaggaattagggccctaacgacagctaatcccttcgctggacgtATGATCGGGTAAAGAAGCTCGCATCCAATCGCTATTGACTAAGTAGGACACTAATTATCGGacgctccc
+>SNP_higher_path_5|P_1:30_A/C|high|nb_pol_1|left_unitig_length_5|right_unitig_length_51|left_contig_length_5|right_contig_length_51|C1_44|Q1_0|G1_0/1:632,15,632|rank_0
 ctatcGCGGCTGTTCGTATGATGACCTATGCGGAGAGGGGAAACCAGATGGGTGACCCAAAAACGCacgcgacctctgtaatagggctccaggtgggaattaggcgtggtccgtcag
->SNP_lower_path_5|P_1:30_A/C|high|nb_pol_1|left_unitig_length_5|right_unitig_length_51|C1_44|Q1_0|G1_0/1:632,15,632|rank_0
+>SNP_lower_path_5|P_1:30_A/C|high|nb_pol_1|left_unitig_length_5|right_unitig_length_51|left_contig_length_5|right_contig_length_51|C1_44|Q1_0|G1_0/1:632,15,632|rank_0
 ctatcGCGGCTGTTCGTATGATGACCTATGCGGAGCGGGGAAACCAGATGGGTGACCCAAAAACGCacgcgacctctgtaatagggctccaggtgggaattaggcgtggtccgtcag
->SNP_higher_path_4|P_1:30_A/G|high|nb_pol_1|left_unitig_length_51|right_unitig_length_0|C1_44|Q1_0|G1_0/1:632,15,632|rank_0
-ggggaaaccagatgggtgacccaaaaacgcacgcgacctctgtaatagggcTCCAGGTGGGAATTAGGCGTGGTCCGTCAGAAATATAGGAGACGAAAACATAGCTCTTCTT
->SNP_lower_path_4|P_1:30_A/G|high|nb_pol_1|left_unitig_length_51|right_unitig_length_0|C1_44|Q1_0|G1_0/1:632,15,632|rank_0
-ggggaaaccagatgggtgacccaaaaacgcacgcgacctctgtaatagggcTCCAGGTGGGAATTAGGCGTGGTCCGTCAGGAATATAGGAGACGAAAACATAGCTCTTCTT
->SNP_higher_path_3|P_1:30_A/C|high|nb_pol_1|left_unitig_length_23|right_unitig_length_0|C1_42|Q1_0|G1_0/1:604,15,604|rank_0
-ccctttatattggctagacggtcTAGTTTTCAATAACCCCTGAGGAGCGGCACAGTATGATACAGGGAGTGAAGGAGGGA
->SNP_lower_path_3|P_1:30_A/C|high|nb_pol_1|left_unitig_length_23|right_unitig_length_0|C1_42|Q1_0|G1_0/1:604,15,604|rank_0
-ccctttatattggctagacggtcTAGTTTTCAATAACCCCTGAGGAGCGGCACCGTATGATACAGGGAGTGAAGGAGGGA
->SNP_higher_path_2|P_1:30_C/T|high|nb_pol_1|left_unitig_length_8|right_unitig_length_0|C1_49|Q1_0|G1_0/1:702,15,702|rank_0
-ctattgacTAAGTAGGACACTAATTATCGGACGCTCCCCGGGGGAGGTCAAC
->SNP_lower_path_2|P_1:30_C/T|high|nb_pol_1|left_unitig_length_8|right_unitig_length_0|C1_49|Q1_0|G1_0/1:702,15,702|rank_0
-ctattgacTAAGTAGGACACTAATTATCGGACGCTCCCTGGGGGAGGTCAAC
->SNP_higher_path_1|P_1:30_A/T|high|nb_pol_1|left_unitig_length_23|right_unitig_length_39|C1_42|Q1_0|G1_0/1:604,15,604|rank_0
+>SNP_higher_path_4|P_1:30_A/G|high|nb_pol_1|left_unitig_length_51|right_unitig_length_0|left_contig_length_87|right_contig_length_0|C1_44|Q1_0|G1_0/1:632,15,632|rank_0
+ctatcgcggctgttcgtatgatgacctatgcggagcggggaaaccagatgggtgacccaaaaacgcacgcgacctctgtaatagggcTCCAGGTGGGAATTAGGCGTGGTCCGTCAGAAATATAGGAGACGAAAACATAGCTCTTCTT
+>SNP_lower_path_4|P_1:30_A/G|high|nb_pol_1|left_unitig_length_51|right_unitig_length_0|left_contig_length_87|right_contig_length_0|C1_44|Q1_0|G1_0/1:632,15,632|rank_0
+ctatcgcggctgttcgtatgatgacctatgcggagcggggaaaccagatgggtgacccaaaaacgcacgcgacctctgtaatagggcTCCAGGTGGGAATTAGGCGTGGTCCGTCAGGAATATAGGAGACGAAAACATAGCTCTTCTT
+>SNP_higher_path_3|P_1:30_A/C|high|nb_pol_1|left_unitig_length_23|right_unitig_length_0|left_contig_length_93|right_contig_length_0|C1_42|Q1_0|G1_0/1:604,15,604|rank_0
+gtcgttgagtcagctcataagccaacgaccagctcactcgccctggacaggagaggcgatcttacaagttccctttatattggctagacggtcTAGTTTTCAATAACCCCTGAGGAGCGGCACAGTATGATACAGGGAGTGAAGGAGGGA
+>SNP_lower_path_3|P_1:30_A/C|high|nb_pol_1|left_unitig_length_23|right_unitig_length_0|left_contig_length_93|right_contig_length_0|C1_42|Q1_0|G1_0/1:604,15,604|rank_0
+gtcgttgagtcagctcataagccaacgaccagctcactcgccctggacaggagaggcgatcttacaagttccctttatattggctagacggtcTAGTTTTCAATAACCCCTGAGGAGCGGCACCGTATGATACAGGGAGTGAAGGAGGGA
+>SNP_higher_path_2|P_1:30_C/T|high|nb_pol_1|left_unitig_length_8|right_unitig_length_0|left_contig_length_106|right_contig_length_0|C1_49|Q1_0|G1_0/1:702,15,702|rank_0
+actactttgttgtccgctccaggcaggaattagggccctaacgacagctaatcccttcgctggacgtatgatcgggtaaagaagctcgcatccaatcgctattgacTAAGTAGGACACTAATTATCGGACGCTCCCCGGGGGAGGTCAAC
+>SNP_lower_path_2|P_1:30_C/T|high|nb_pol_1|left_unitig_length_8|right_unitig_length_0|left_contig_length_106|right_contig_length_0|C1_49|Q1_0|G1_0/1:702,15,702|rank_0
+actactttgttgtccgctccaggcaggaattagggccctaacgacagctaatcccttcgctggacgtatgatcgggtaaagaagctcgcatccaatcgctattgacTAAGTAGGACACTAATTATCGGACGCTCCCTGGGGGAGGTCAAC
+>SNP_higher_path_1|P_1:30_A/T|high|nb_pol_1|left_unitig_length_23|right_unitig_length_39|left_contig_length_23|right_contig_length_39|C1_42|Q1_0|G1_0/1:604,15,604|rank_0
 gtgccgctcctcaggggttattgAAAACTAGACCGTCTAGCCAATATAAAGGGAACTTGTAAGATCGCCTCTCCTGTCCAGGGCgagtgagctggtcgttggcttatgagctgactcaacgac
->SNP_lower_path_1|P_1:30_A/T|high|nb_pol_1|left_unitig_length_23|right_unitig_length_39|C1_42|Q1_0|G1_0/1:604,15,604|rank_0
+>SNP_lower_path_1|P_1:30_A/T|high|nb_pol_1|left_unitig_length_23|right_unitig_length_39|left_contig_length_23|right_contig_length_39|C1_42|Q1_0|G1_0/1:604,15,604|rank_0
 gtgccgctcctcaggggttattgAAAACTAGACCGTCTAGCCAATATAAAGGGTACTTGTAAGATCGCCTCTCCTGTCCAGGGCgagtgagctggtcgttggcttatgagctgactcaacgac