Mercurial > repos > iuc > colibread_kissplice

annotate test-data/discosnp/vcf_file_paired.vcf @ 3:98734f82a87e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 45e32ab41e7cdc4e3dabe87f074f052667c22574"
author iuc
date Wed, 22 Jan 2020 17:28:53 -0500
parents d5b4404c4788
children ccc77612cbb9
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
1 ##fileformat=VCFv4.1
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
2 ##filedate=2017102
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
3 ##source=VCF_creator
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
4 ##SAMPLE=file://discoRes_k_31_c_auto_D_0_P_1_b_0_coherentBWA_MEM.sam
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
5 ##REF=<ID=REF,Number=1,Type=String,Description="Allele of the path Disco aligned with the least mismatches">
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
6 ##FILTER=<ID=MULTIPLE,Description="Mapping type : PASS or MULTIPLE or .">
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
7 ##INFO=<ID=Ty,Number=1,Type=String,Description="SNP, INS, DEL or .">
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
8 ##INFO=<ID=Rk,Number=1,Type=Float,Description="SNP rank">
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
9 ##INFO=<ID=UL,Number=1,Type=Integer,Description="length of the unitig left">
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
10 ##INFO=<ID=UR,Number=1,Type=Integer,Description="length of the unitig right">
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
11 ##INFO=<ID=CL,Number=1,Type=Integer,Description="length of the contig left">
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
12 ##INFO=<ID=CR,Number=1,Type=Integer,Description="length of the contig right">
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
13 ##INFO=<ID=Genome,Number=1,Type=String,Description="Allele of the reference;for indel reference is . ">
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
14 ##INFO=<ID=Sd,Number=1,Type=Integer,Description="Reverse (-1) or Forward (1) Alignement">
1
d5b4404c4788 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 7e976e65d4630ce8b485efd1d50a168ba98276e6
iuc
parents: 0
diff changeset
15 ##INFO=<ID=XA,Number=0/1,Type=String,Description="Other mapping positions (chromosome_position). Position is negative in case of Reverse alignment. The position designs the starting position of the alignment, not the position of the variant itself.">
0
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
16 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
17 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Cumulated depth accross samples (sum)">
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
18 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled Genotype Likelihoods">
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
19 ##FORMAT=<ID=AD,Number=2,Type=Integer,Description="Depth of each allele by sample">
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
20 ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality">
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
21 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT G1
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
22 read661_contig0_position139_M0_I0_D0_NG0______er0__indel0__rgeom0_rev0 62 3 C G . MULTIPLE Ty=SNP;Rk=0;UL=.;UR=.;CL=.;CR=.;Genome=C;Sd=1 GT:DP:PL:AD:HQ 0/1:258:1927,18,1727:124,134:0,0
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
23 read780_contig0_position26_M0_I0_D0_NG0______er0__indel0__rgeom0_rev1 43 2 A T . MULTIPLE Ty=SNP;Rk=0;UL=.;UR=.;CL=.;CR=.;Genome=A;Sd=1 GT:DP:PL:AD:HQ 0/1:160:1260,18,1020:74,86:0,0
4acdd256cc12 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
iuc
parents:
diff changeset
24 read656_contig0_position454_M0_I0_D0_NG0______er0__indel0__rgeom0_rev1 62 1 T A . MULTIPLE Ty=SNP;Rk=0;UL=.;UR=.;CL=.;CR=.;Genome=T;Sd=1 GT:DP:PL:AD:HQ 0/1:224:1628,17,1548:110,114:0,0