comparison macros.xml @ 4:ccc77612cbb9 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 0ed02865f048ad7471ea79509c0e23162bc29166"

3:98734f82a87e

<macros>
    <xml name="discosnp_requirements">
        <requirements>
            <requirement type="package" version="2.3.0">discosnp</requirement>
        </requirements>
    </xml>

    <token name="@DISCOSNP_VERSION@">2.3.0</token>

    <token name="@discosnp_single_reads@"><![CDATA[
        #for $input in $input_type_options.list_reads
            #set $filename = os.path.basename(str($input)) + "." + $input.ext
            ln -sf '${input}' '${filename}' &&

                <option value="auto"></option>
                <option value="custom"></option>
            </param>
            <when value="auto" />
            <when value="custom">
                <param argument="-c" type="text" label="Minimal coverage per read set" value="4" help="e.g. 4 / 4,5,17 / 4,auto,auto"/>
            </when>
        </conditional>

        <param argument="-C" type="integer" label="Maximal coverage per read set" value="2147483647" help="default value = 2^31-1" />
        <param argument="-d" type="integer" label="Max number of errors per read" value="1" help="Max number of errors per read" />

    </xml>

    <token name="@discosnp_inputs@"><![CDATA[
        -r input.lst
        -b ${b}
        -D ${D}
        -P ${P}
        ${low_complexity}
        -k ${k}

4:ccc77612cbb9

<macros>
    <token name="@DISCOSNP_VERSION@">2.5.4</token>

    <xml name="discosnp_requirements">
        <requirements>
            <requirement type="package" version="@DISCOSNP_VERSION@">discosnp</requirement>
        </requirements>
    </xml>

    <token name="@discosnp_single_reads@"><![CDATA[
        #for $input in $input_type_options.list_reads
            #set $filename = os.path.basename(str($input)) + "." + $input.ext
            ln -sf '${input}' '${filename}' &&

                <option value="auto"></option>
                <option value="custom"></option>
            </param>
            <when value="auto" />
            <when value="custom">
                <param argument="-c" type="text" label="Minimal coverage per read set" value="3" help="e.g. 3 / 3,5,17 / 3,auto,auto"/>
            </when>
        </conditional>

        <param argument="-C" type="integer" label="Maximal coverage per read set" value="2147483647" help="default value = 2^31-1" />
        <param argument="-d" type="integer" label="Max number of errors per read" value="1" help="Max number of errors per read" />

    </xml>

    <token name="@discosnp_inputs@"><![CDATA[
        -r input.lst
        -D ${D}
        -P ${P}
        ${low_complexity}
        -k ${k}