Mercurial > repos > iuc > colibread_lordec
comparison test-data/discosnp/vcf_file.vcf @ 0:dd5398cf0eeb draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit a213833526146246d277ec7851165971449b501e
| author | iuc |
|---|---|
| date | Fri, 20 Oct 2017 03:13:51 -0400 |
| parents | |
| children | 13c8e1ce0a15 |
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| -1:000000000000 | 0:dd5398cf0eeb |
|---|---|
| 1 ##fileformat=VCFv4.1 | |
| 2 ##filedate=2017102 | |
| 3 ##source=VCF_creator | |
| 4 ##SAMPLE=file://discoRes_k_25_c_auto_D_0_P_1_b_0_coherent.fa | |
| 5 ##REF=<ID=REF,Number=1,Type=String,Description="Allele of the path Disco aligned with the least mismatches"> | |
| 6 ##FILTER=<ID=MULTIPLE,Description="Mapping type : PASS or MULTIPLE or ."> | |
| 7 ##INFO=<ID=Ty,Number=1,Type=String,Description="SNP, INS, DEL or ."> | |
| 8 ##INFO=<ID=Rk,Number=1,Type=Float,Description="SNP rank"> | |
| 9 ##INFO=<ID=UL,Number=1,Type=Integer,Description="length of the unitig left"> | |
| 10 ##INFO=<ID=UR,Number=1,Type=Integer,Description="length of the unitig right"> | |
| 11 ##INFO=<ID=CL,Number=1,Type=Integer,Description="length of the contig left"> | |
| 12 ##INFO=<ID=CR,Number=1,Type=Integer,Description="length of the contig right"> | |
| 13 ##INFO=<ID=Genome,Number=1,Type=String,Description="Allele of the reference;for indel reference is . "> | |
| 14 ##INFO=<ID=Sd,Number=1,Type=Integer,Description="Reverse (-1) or Forward (1) Alignement"> | |
| 15 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
| 16 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Cumulated depth accross samples (sum)"> | |
| 17 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled Genotype Likelihoods"> | |
| 18 ##FORMAT=<ID=AD,Number=2,Type=Integer,Description="Depth of each allele by sample"> | |
| 19 ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality"> | |
| 20 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT G1 G2 | |
| 21 SNP_higher_path_3 24 3 A T . . Ty=SNP;Rk=1;UL=.;UR=.;CL=.;CR=.;Genome=.;Sd=. GT:DP:PL:AD:HQ 0/0:74:8,227,1484:74,0:0,0 1/1:86:1724,263,8:0,86:0,0 | |
| 22 SNP_higher_path_2 24 2 C G . . Ty=SNP;Rk=1;UL=.;UR=.;CL=.;CR=.;Genome=.;Sd=. GT:DP:PL:AD:HQ 1/1:124:2484,378,10:0,124:0,0 0/0:134:10,408,2684:134,0:0,0 | |
| 23 SNP_higher_path_1 24 1 A T . . Ty=SNP;Rk=1;UL=.;UR=.;CL=.;CR=.;Genome=.;Sd=. GT:DP:PL:AD:HQ 1/1:110:2204,335,9:0,110:0,0 0/0:114:9,347,2284:114,0:0,0 |