Mercurial > repos > iuc > colibread_mapsembler2
view test-data/discosnp/vcf_file.vcf @ 5:c5371f68db91 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 8d37fef93da141323cc120b5fec737432e497dcf"
author | iuc |
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date | Thu, 06 May 2021 12:46:55 +0000 |
parents | e7c5b81b3c22 |
children |
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##fileformat=VCFv4.1 ##filedate=2020814XX ##source=VCF_creator ##SAMPLE=file://discoRes_k_25_c_auto_D_0_P_1_b_0_coherent.fa ##REF=<ID=REF,Number=1,Type=String,Description="Allele of the path Disco aligned with the least mismatches"> ##FILTER=<ID=MULTIPLE,Description="Mapping type : PASS or MULTIPLE or ."> ##INFO=<ID=Ty,Number=1,Type=String,Description="SNP, INS, DEL or ."> ##INFO=<ID=Rk,Number=1,Type=Float,Description="SNP rank"> ##INFO=<ID=UL,Number=1,Type=Integer,Description="length of the unitig left"> ##INFO=<ID=UR,Number=1,Type=Integer,Description="length of the unitig right"> ##INFO=<ID=CL,Number=1,Type=Integer,Description="length of the contig left"> ##INFO=<ID=CR,Number=1,Type=Integer,Description="length of the contig right"> ##INFO=<ID=Genome,Number=1,Type=String,Description="Allele of the reference;for indel reference is . "> ##INFO=<ID=Sd,Number=1,Type=Integer,Description="Reverse (-1) or Forward (1) Alignement"> ##INFO=<ID=XA,Number=.,Type=String,Description="Other mapping positions (chromosome_position). Position is negative in case of Reverse alignment. The position designs the starting position of the alignment, not the position of the variant itself."> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Cumulated depth accross samples (sum)"> ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled Genotype Likelihoods"> ##FORMAT=<ID=AD,Number=2,Type=Integer,Description="Depth of each allele by sample"> ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality"> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT G1 G2 SNP_higher_path_3 116 3 A T . . Ty=SNP;Rk=1;UL=92;UR=55;CL=.;CR=.;Genome=.;Sd=. GT:DP:PL:AD:HQ 0/0:74:8,227,1484:74,0:0,0 1/1:86:1724,263,8:0,86:0,0 SNP_higher_path_2 291 2 C G . . Ty=SNP;Rk=1;UL=267;UR=92;CL=.;CR=.;Genome=.;Sd=. GT:DP:PL:AD:HQ 1/1:124:2484,378,10:0,124:0,0 0/0:134:10,408,2684:134,0:0,0 SNP_higher_path_1 499 1 A T . . Ty=SNP;Rk=1;UL=475;UR=267;CL=.;CR=.;Genome=.;Sd=. GT:DP:PL:AD:HQ 1/1:110:2204,335,9:0,110:0,0 0/0:114:9,347,2284:114,0:0,0