Mercurial > repos > iuc > colibread_mapsembler2

changeset 6:e395a941a7e1 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 747394d19e88a569a5154615e366ea0401c820dd
author iuc
date Sat, 05 Oct 2024 19:54:50 +0000
parents c5371f68db91
children
files macros.xml mapsembler2.xml
diffstat 2 files changed, 9 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Thu May 06 12:46:55 2021 +0000
+++ b/macros.xml	Sat Oct 05 19:54:50 2024 +0000
@@ -1,11 +1,10 @@
 <macros>
-    <token name="@DISCOSNP_VERSION@">2.5.4</token>
 
-    <token name="@PROFILE@">20.01</token>
+    <token name="@PROFILE@">23.1</token>
 
     <xml name="discosnp_requirements">
         <requirements>
-            <requirement type="package" version="@DISCOSNP_VERSION@">discosnp</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">discosnp</requirement>
         </requirements>
     </xml>
 
--- a/mapsembler2.xml	Thu May 06 12:46:55 2021 +0000
+++ b/mapsembler2.xml	Sat Oct 05 19:54:50 2024 +0000
@@ -1,10 +1,11 @@
-<tool id="mapsembler2" name="Mapsembler2" version="2.2.4+galaxy0" profile="@PROFILE@">
+<tool id="mapsembler2" name="Mapsembler2" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
     <description>is a targeted assembly software</description>
     <macros>
+        <token name="@TOOL_VERSION@">2.2.4</token>
         <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="2.2.4">mapsembler2</requirement>
+        <requirement type="package" version="@TOOL_VERSION@">mapsembler2</requirement>
     </requirements>
     <command><![CDATA[
         #import re
@@ -52,10 +53,10 @@
         <param argument="-y" type="integer" label="Max depth of nodes" value="10000" help="Set the maximal depth of the graph"/>
     </inputs>
     <outputs>
-        <data name="fasta" from_work_dir="res_k_*.fasta" format="fasta" label="Assembly with ${tool.name} on $on_string"/>
-        <data name="coherent" from_work_dir="res_coherent_*.fasta" format="fasta" label="Coherent with ${tool.name} on $on_string" hidden="true"/>
-        <data name="uncoherent" from_work_dir="res_uncoherent_*.fasta" format="fasta" label="Uncoherent with ${tool.name} on $on_string" hidden="true"/>
-        <data name="extremities" from_work_dir="starter_extremities.fa" format="fasta" label="Starter extremities with ${tool.name} on $on_string" hidden="true"/>
+        <data name="fasta" from_work_dir="res_k_*.fasta" format="fasta" label="${tool.name} on ${on_string}: Assembly"/>
+        <data name="coherent" from_work_dir="res_coherent_*.fasta" format="fasta" label="${tool.name} on ${on_string}: Coherent" hidden="true"/>
+        <data name="uncoherent" from_work_dir="res_uncoherent_*.fasta" format="fasta" label="${tool.name} on ${on_string}: Uncoherent" hidden="true"/>
+        <data name="extremities" from_work_dir="starter_extremities.fa" format="fasta" label="${tool.name} on ${on_string}: Starter extremities" hidden="true"/>
     </outputs>
     <tests>
         <test>