diff merge_cut_up_clustering.xml @ 0:b546422c9128 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/concoct commit 40a09cbfd6052f7b0295946621db1bdf58228b09"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/merge_cut_up_clustering.xml	Sun Mar 13 08:44:34 2022 +0000
@@ -0,0 +1,34 @@
+<tool id="concoct_merge_cut_up_clustering" name="CONCOCT: merge cut clusters" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+    <description>into the original</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <command detect_errors="exit_code"><![CDATA[
+python '$__tool_directory__/merge_cut_up_clustering.py'
+--input '$input'
+--output '$output'
+    ]]></command>
+    <inputs>
+        <param name="input" type="data" format="tabular" label="Tabular file containng cut up contigs"/>
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular"/>
+    </outputs>
+    <tests>
+        <!-- default settings -->
+        <test expect_num_outputs="1">
+            <param name="input" value="input_merge_clusters.tabular" ftype="tabular"/>
+            <output name="output" file="output_merge_clusters.tabular" ftype="tabular"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+**What it does**
+
+Accepts a tbular file containing clusters output by the CONCOCT metagenome binning tool
+and produces a tabular file of the original contigs, with consecutive slices merged.
+
+@HELP_OVERVIEW@
+    ]]></help>
+    <expand macro="citations"/>
+</tool>