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annotate test-data/omicron_ba1_mutations.yaml @ 3:ce8b15a55bbe draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit dbe11701b46195306ce4bbad1935824461e17520
author iuc
date Fri, 14 Jun 2024 21:23:44 +0000
parents d04ea6b052c5
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
1 variant:
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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2 voc: VOC-21NOV-01
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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3 pheuid: pentagon-refining
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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4 short: om1
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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5 pangolin: BA.1
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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6 source:
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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7 - https://github.com/cov-lineages/pango-designation/issues/343
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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8 threshold: 10
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
9 mut:
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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10 # ORF1ab
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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11 2832: 'A>G' # nsp3:K38R
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
12 5386: 'T>G' # syn nsp3
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
13 8393: 'G>A' # nsp3:A1892T
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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14 11537: 'A>G' # nsp6:I189V
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
15 13195: 'T>C' # syn nsp10
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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16 18163: 'A>G' # nsp14:I42V
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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17 # S
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
18 22679: 'T>C' # surface glycoprotein:S373P
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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19 22898: 'G>A' # surface glycoprotein:G446S
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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20 23048: 'G>A' # surface glycoprotein:G496S
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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21 23202: 'C>A' # surface glycoprotein:T547K
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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22 23599: 'T>G' # surface glycoprotein:N679K
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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23 24130: 'C>A' # surface glycoprotein:N856K
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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24 24469: 'T>A' # surface glycoprotein:N969K
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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25 24503: 'C>T' # surface glycoprotein:L981F
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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26 # M
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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27 26530: 'A>G' # membrane glycoprotein:D3G
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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28 26577: 'C>G' # membrane glycoprotein:Q19E
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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29 # ORF6
d04ea6b052c5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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30 27259: 'A>C' # syn ORF6 protein