Mercurial > repos > iuc > coverm_contig
diff macros.xml @ 1:688a777e1b19 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/coverm commit 2388df7187533fb66b7729730340d2eb7b93c112
author | iuc |
---|---|
date | Tue, 24 Jan 2023 12:33:11 +0000 |
parents | 6941d0d453ba |
children | c2a5823e4763 |
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--- a/macros.xml Tue Apr 26 15:27:37 2022 +0000 +++ b/macros.xml Tue Jan 24 12:33:11 2023 +0000 @@ -1,12 +1,13 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package">coverm</requirement> + <requirement type="package" version="@TOOL_VERSION@">coverm</requirement> </requirements> </xml> <token name="@INPUT_FORMATS@">fasta,fastq,fastq.gz,fasta.gz</token> - <token name="@TOOL_VERSION@">0.2.1</token> + <token name="@TOOL_VERSION@">0.6.1</token> <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">22.01</token> <xml name="citation"> <citations> <citation type="bibtex"> @@ -96,7 +97,10 @@ </when> </conditional> <conditional name="add_genome"> - <param name="add_genome" type="boolean" label="Add additional Genome Files"/> + <param name="add_genome" type="select" label="Add additional Genome Files"> + <option value="true">Yes</option> + <option value="false" selected="true">No</option> + </param> <when value="true"> <conditional name="add_genomic"> <param type="select" label="Reference genome source" name="source"> @@ -186,7 +190,7 @@ <xml name="add_reads"> <section name="add_reads" title="Add an additional read"> <conditional name="extra_read"> - <param type="select" label="Read type" optional="true" name="read_type"> + <param type="select" label="Read type" name="read_type"> <option value="none" selected="true">None</option> <option value="paired">Paired end</option> <option value="paired_collection">Paired collection</option> @@ -251,7 +255,10 @@ <param name="relative_abundance" type="boolean" falsevalue="" truevalue="relative_abundance" label="Relative abundance (default)"/> <param name="mean" type="boolean" falsevalue="" truevalue="mean" label="Mean"/> <conditional name="cond_methods"> - <param name="trimmed_mean" type="boolean" falsevalue="" truevalue="trimmed_mean" label="Trimmed mean"/> + <param name="trimmed_mean" type="select" label="Trimmed mean"> + <option value="trimmed_mean">Yes</option> + <option value="" selected="true">No</option> + </param> <when value="trimmed_mean"> <param name="trim_min" type="integer" min="0" value="5" label="Trim min" help="Remove this smallest fraction of positions when calculating trimmed_mean default: 5"/> <param name="trim_max" type="integer" min="0" value="95" label="Trim max" help="Maximum fraction for trimmed_mean calculations default: 95"/>