# HG changeset patch
# User iuc
# Date 1692350601 0
# Node ID 1dcea261abbe3d91b92cc8805ef5c690aa221f1a
# Parent c2a5823e47631ae46e7db3547d11a8e965267d01
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/coverm commit bc3831e3648809bd3d46611b2a74bd26a17985e5
diff -r c2a5823e4763 -r 1dcea261abbe coverm_contig.xml
--- a/coverm_contig.xml Wed Jul 26 07:35:24 2023 +0000
+++ b/coverm_contig.xml Fri Aug 18 09:23:21 2023 +0000
@@ -231,6 +231,51 @@
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diff -r c2a5823e4763 -r 1dcea261abbe macros.xml
--- a/macros.xml Wed Jul 26 07:35:24 2023 +0000
+++ b/macros.xml Fri Aug 18 09:23:21 2023 +0000
@@ -1,6 +1,6 @@
0.6.1
- 1
+ 2
22.01
@@ -118,9 +118,6 @@
-
-
-
@@ -132,7 +129,7 @@
-
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@@ -168,7 +165,7 @@
ln -s '$reads.paired_reads.forward' '$fn' &&
#set $fn = "rv/" + $id
#silent $rv_fp.append( $fn )
-ln -s '$mreads.paired_reads.reverse' '${fn}' &&
+ln -s '$reads.paired_reads.reverse' '$fn' &&
#else if $reads.type == 'interleaved'
#set $fn = "interl/" + re.sub('[^\s\w\-\\.]', '_', str($reads.interleaved.element_identifier))
#silent $interl_fp.append( $fn )
@@ -206,7 +203,7 @@
-
+
@@ -341,4 +338,4 @@
-
\ No newline at end of file
+