# HG changeset patch # User iuc # Date 1690356903 0 # Node ID bb3f59096c8e7d77ef08b8f2f41cd2ca185f682f # Parent 5bf5792b0996ccc5b6b9d82d83795ce83a533912 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tools/coverm commit 2d02165f40a9f8206a69716b2302bc58f5364982 diff -r 5bf5792b0996 -r bb3f59096c8e coverm_genome.xml --- a/coverm_genome.xml Tue Mar 28 08:36:25 2023 +0000 +++ b/coverm_genome.xml Wed Jul 26 07:35:03 2023 +0000 @@ -3,555 +3,668 @@ macros.xml + - - -
- - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + + + + +
+
+ + + + + + + + + + + + + + + + + + + + + + + + + label="dRep style genome info table for defining quality" /> + label="Minimum completeness" help="Genomes with lower completeness percentage will be ignored" /> - - - - - - - - - - - - - - + label="Maximum contamination" help="Genomes with higher contamination percentage will be ignored" />
-
- - +
+ + + +
- - - - - - derep['dereplicate'] and out['dereplication_output_cluster_definition'] + + + derep['dereplicate']['dereplicate'] and out['dereplication_output_cluster_definition'] - + - derep['dereplicate'] and out['dereplication_output_representative_fasta_directory_copy'] + derep['dereplicate']['dereplicate'] and out['dereplication_output_representative_fasta_directory_copy'] - - - - - - - - + + + + + + + + + + + + + + - - - - - - + + + + + + + + + + + - - + + + + + + + -
- - - + +
+ + + + + +
- - - + + + + + +
+
+ + +
+ + +
- + + + + + + + + + + + + - - - - - - + + + + + + + + + + + + + + + + + -
- - -
-
- - + +
+ + + + + + +
- - + + + + + +
+
+ + +
+ + +
- + + + + + + + + + -
- - + + + + + + + + + + + + + + + + + + + +
+ + + + + + +
- + + + +
- - - - - - - - - +
+ + + + + + + + - - + +
+
+ + + + +
+ - + + + + + - - - - - - - - + + + + + + + + + + + + + + - - - - - - - - + + + + + + + + + + +
+ + + + + + + +
- + + + + +
- + + + + + + + + +
- - + + + +
- - + + + + + + + + + + + + + + + + + - - - + + + + + + + + + + + + + + + + + +
- - - - - - + + + + + + + + + + + + + + + + + +
+ + + + + + + +
- + + + +
- +
+ + + +
+
+ + + + +
+ + + + + + + + +
- + + 0.6.1 + 1 + 22.01 coverm - fasta,fastq,fastq.gz,fasta.gz - 0.6.1 - 0 - 22.01 + + + coverm + + @@ -22,275 +26,315 @@ - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + - - - - - + + + + + - - - - - + + + + + + + - - + + + - - - - - - - - - - - - - - - - - - - + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + fasta,fastq,fastq.gz,fasta.gz + + + + + + + + + + + + + + + + + - - - + + - - - - - - + - - - - - - + - - - - - - - - - - + + + + + + + + + + + + + + + + + + + - - - + + - - - - - - + - - - - - - + - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -
+ + + + + + + + + -
- - - - - - - - - - - - - - - -
+ + + + + + +
- -
- - - - - + +
+ + + + + + - - - + + + + - - - - - - - - - - - - +
- -
- - - - - - - -
+ + + + + + + + + + + + + + + + + + + + + + +