# HG changeset patch
# User iuc
# Date 1527203413 14400
# Node ID f208825f64ecb6f3d6e5feaf9b04a164e5a78837
# Parent  566f43df9ef47f5997ca6fae4db57f2f4472d284
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 23fab16cd40acbd5b0e9d640ed3858040db7a622

diff -r 566f43df9ef4 -r f208825f64ec crossmap_bigwig.xml
--- a/crossmap_bigwig.xml	Fri Oct 20 11:33:27 2017 -0400
+++ b/crossmap_bigwig.xml	Thu May 24 19:10:13 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="crossmap_bw" name="CrossMap BigWig" version="@WRAPPER_VERSION@-0">
+<tool id="crossmap_bw" name="CrossMap BigWig" version="@WRAPPER_VERSION@">
     <description>Convert genome coordinates or annotation files between genome assemblies</description>
     <macros>
         <import>macros.xml</import>
@@ -11,9 +11,7 @@
 CrossMap.py bigwig
 '${chain_source.input_chain}'
 '${input}'
-'${output}'
-
-&& mv '${output}.bw' '${output}'
+output
     ]]></command>
 
     <inputs>
@@ -23,7 +21,7 @@
     </inputs>
 
     <outputs>
-        <data name="output" format="bigwig" label="${tool.name} on ${on_string}" />
+        <data name="output" format="bigwig" label="${tool.name} on ${on_string}" from_work_dir="output.bw" />
     </outputs>
 
     <tests>
@@ -54,7 +52,6 @@
 wigToBigWig tool. We export files in bedGraph because it is usually much
 smaller than file in wiggle format, and more importantly, CrossMap
 internally transforms wiggle into bedGraph to increase running speed.
-
     ]]></help>
 
     <citations>
diff -r 566f43df9ef4 -r f208825f64ec macros.xml
--- a/macros.xml	Fri Oct 20 11:33:27 2017 -0400
+++ b/macros.xml	Thu May 24 19:10:13 2018 -0400
@@ -2,11 +2,11 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="0.2.5">crossmap</requirement>
+            <requirement type="package" version="0.2.7">crossmap</requirement>
             <yield/>
         </requirements>
     </xml>
-    <token name="@WRAPPER_VERSION@">0.2.5</token>
+    <token name="@WRAPPER_VERSION@">0.2.7</token>
     <xml name="stdio">
         <stdio>
             <regex match="Aborted (core dumped)" source="stdout" level="fatal"/>