diff crossmap_gff.xml @ 9:040eed862c91 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 23fab16cd40acbd5b0e9d640ed3858040db7a622

--- a/crossmap_gff.xml	Fri Oct 20 11:33:52 2017 -0400
+++ b/crossmap_gff.xml	Thu May 24 19:10:01 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="crossmap_gff" name="CrossMap GFF" version="@WRAPPER_VERSION@-0">
+<tool id="crossmap_gff" name="CrossMap GFF" version="@WRAPPER_VERSION@">
     <description>Convert genome coordinates or annotation files between genome assemblies</description>
     <macros>
         <import>macros.xml</import>
@@ -16,7 +16,7 @@
     >
 #end if
 
-'${output}'
+output
     ]]></command>
 
     <inputs>
@@ -28,7 +28,7 @@
     </inputs>
 
     <outputs>
-        <data name="output" format="gff" label="${tool.name} on ${on_string}" />
+        <data name="output" format="gff" label="${tool.name} on ${on_string}" from_work_dir="output" />
     </outputs>
 
     <tests>
@@ -74,7 +74,6 @@
   independently, and we do NOT check if features originally belonging to
   the same gene were converted into the same gene.
 - If user want to liftover gene annotation files, use BED12 format.
-
     ]]></help>
 
     <citations>