Mercurial > repos > iuc > crossmap_gff
changeset 9:040eed862c91 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 23fab16cd40acbd5b0e9d640ed3858040db7a622
| author | iuc |
|---|---|
| date | Thu, 24 May 2018 19:10:01 -0400 |
| parents | 45c57bf42470 |
| children | e80720e27001 |
| files | crossmap_gff.xml macros.xml |
| diffstat | 2 files changed, 5 insertions(+), 6 deletions(-) [+] |
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--- a/crossmap_gff.xml Fri Oct 20 11:33:52 2017 -0400 +++ b/crossmap_gff.xml Thu May 24 19:10:01 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="crossmap_gff" name="CrossMap GFF" version="@WRAPPER_VERSION@-0"> +<tool id="crossmap_gff" name="CrossMap GFF" version="@WRAPPER_VERSION@"> <description>Convert genome coordinates or annotation files between genome assemblies</description> <macros> <import>macros.xml</import> @@ -16,7 +16,7 @@ > #end if -'${output}' +output ]]></command> <inputs> @@ -28,7 +28,7 @@ </inputs> <outputs> - <data name="output" format="gff" label="${tool.name} on ${on_string}" /> + <data name="output" format="gff" label="${tool.name} on ${on_string}" from_work_dir="output" /> </outputs> <tests> @@ -74,7 +74,6 @@ independently, and we do NOT check if features originally belonging to the same gene were converted into the same gene. - If user want to liftover gene annotation files, use BED12 format. - ]]></help> <citations>
--- a/macros.xml Fri Oct 20 11:33:52 2017 -0400 +++ b/macros.xml Thu May 24 19:10:01 2018 -0400 @@ -2,11 +2,11 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="0.2.5">crossmap</requirement> + <requirement type="package" version="0.2.7">crossmap</requirement> <yield/> </requirements> </xml> - <token name="@WRAPPER_VERSION@">0.2.5</token> + <token name="@WRAPPER_VERSION@">0.2.7</token> <xml name="stdio"> <stdio> <regex match="Aborted (core dumped)" source="stdout" level="fatal"/>