Mercurial > repos > iuc > crossmap_gff
changeset 5:567ddd432541 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447-dirty
| author | iuc |
|---|---|
| date | Tue, 26 Sep 2017 06:04:35 -0400 |
| parents | b18ce8713041 |
| children | 9ca13f08f2f7 |
| files | macros.xml tool_data_table_conf.xml.sample |
| diffstat | 2 files changed, 8 insertions(+), 3 deletions(-) [+] |
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--- a/macros.xml Tue Sep 26 06:03:11 2017 -0400 +++ b/macros.xml Tue Sep 26 06:04:35 2017 -0400 @@ -26,7 +26,12 @@ </param> <when value="cached"> <param name="input_chain" type="select" label="Lift Over To"> - <options from_data_table="liftOver" /> + <options from_file="liftOver.loc"> + <column name="dbkey" index="0"/><!-- species/build 'from' --> + <column name="name" index="1"/><!-- species/build 'to' --> + <column name="value" index="2"/><!-- path of chain file --> + <filter type="data_meta" ref="input" key="dbkey"/> + </options> </param> </when> <when value="history">
--- a/tool_data_table_conf.xml.sample Tue Sep 26 06:03:11 2017 -0400 +++ b/tool_data_table_conf.xml.sample Tue Sep 26 06:04:35 2017 -0400 @@ -1,10 +1,10 @@ <tables> - + <!-- Locations of all fasta files under genome directory --> <table name="all_fasta" comment_char="#"> <columns>value, dbkey, name, path</columns> <file path="tool-data/all_fasta.loc" /> </table> - + <!-- Locations of all liftOver files --> <table name="liftOver" comment_char="#"> <columns>dbkey, name, value</columns> <file path="tool-data/liftOver.loc" />