# HG changeset patch
# User iuc
# Date 1637090206 0
# Node ID 6e96c77f5824ddd583fd5ec9caeb783c3d58dbc5
# Parent  71730c177cdf866ceb6255dcbfcd1ce712bb59f3
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 07b2b6b9b288fd4ad368fc7a4f0143bb73e9edd9"

diff -r 71730c177cdf -r 6e96c77f5824 crossmap_vcf.xml
--- a/crossmap_vcf.xml	Thu Jul 15 16:20:06 2021 +0000
+++ b/crossmap_vcf.xml	Tue Nov 16 19:16:46 2021 +0000
@@ -10,6 +10,8 @@
     <command detect_errors="aggressive"><![CDATA[
 #set $input_file = str($seq_source.input)
 
+ln -s '${seq_source.input_fasta}' 'genome.fasta' &&
+
 CrossMap.py vcf
 
 #if $seq_source.index_source_s == "cached"
@@ -20,7 +22,7 @@
 #end if
 
 '${input_file}'
-'${seq_source.input_fasta}'
+'genome.fasta'
 $no_comp_alleles
 output
     ]]></command>