Mercurial > repos > iuc > crossmap_wig
changeset 2:d0e7cc22351f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 39a5f30a013c6d71ea84807b72511e3aa4bab147
| author | iuc |
|---|---|
| date | Fri, 20 Oct 2017 11:33:40 -0400 |
| parents | 81986a56b281 |
| children | 8c26026e7ad9 |
| files | crossmap_wig.xml macros.xml test-data/cached_locally/liftOver.loc |
| diffstat | 3 files changed, 3 insertions(+), 5 deletions(-) [+] |
line wrap: on
line diff
--- a/crossmap_wig.xml Fri Oct 20 02:49:58 2017 -0400 +++ b/crossmap_wig.xml Fri Oct 20 11:33:40 2017 -0400 @@ -38,8 +38,8 @@ <output name="output2" file="test_wig_01_output_a.sorted.bgr"/> </test> - <test> - <param name="input" value="test_wig_01_input_a.wig" ftype="wig"/> + <test><!-- cached reference genome --> + <param name="input" value="test_wig_01_input_a.wig" ftype="wig" dbkey="hg18" /> <param name="index_source" value="cached"/> <output name="output" file="test_wig_01_output_a.bw"/>
--- a/macros.xml Fri Oct 20 02:49:58 2017 -0400 +++ b/macros.xml Fri Oct 20 11:33:40 2017 -0400 @@ -28,9 +28,7 @@ <when value="cached"> <param name="input_chain" type="select" label="Lift Over To"> <options from_data_table="liftOver"> - <!-- <filter type="data_meta" ref="input" key="dbkey" column="0"/> - --> </options> </param> </when>
--- a/test-data/cached_locally/liftOver.loc Fri Oct 20 02:49:58 2017 -0400 +++ b/test-data/cached_locally/liftOver.loc Fri Oct 20 11:33:40 2017 -0400 @@ -29,4 +29,4 @@ #anoCar1 hg18 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToHg18.over.chain #...etc... -A B ${__HERE__}/aToB.over.chain +hg18 hg19 ${__HERE__}/aToB.over.chain