annotate generate_test_data.sh @ 9:5ed774e1616e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 70ba929dd55348ee43753e6ae29bd45c5cdf5471
author iuc
date Sat, 10 Feb 2024 23:56:32 +0000
parents a6c3f4f439f7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
1 #/usr/bin/env bash
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
2
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
3 metaphlan_hclust_heatmap.py \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
4 --in test-data/merged_community_profile.tabular \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
5 --out test-data/heatmap.png \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
6 -m 'average' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
7 -d 'braycurtis' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
8 -f 'correlation' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
9 --minv '0' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
10 --tax_lev 'a' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
11 --sdend_h '0.1' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
12 --fdend_w '0.1' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
13 --cm_h '0.03' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
14 --font_size '7' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
15 --clust_line_w '1' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
16 --perc '90' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
17 -c 'jet'
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
18
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
19 metaphlan_hclust_heatmap.py \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
20 --in test-data/merged_community_profile.tabular \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
21 --out test-data/heatmap.pdf \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
22 -m 'ward' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
23 -d 'euclidean' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
24 -f 'euclidean' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
25 --minv '0' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
26 --tax_lev 'a' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
27 --sdend_h '0.1' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
28 --fdend_w '0.1' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
29 --cm_h '0.03' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
30 --font_size '7' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
31 --clust_line_w '1' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
32 --perc '90' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
33 -c 'pink'
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
34
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
35 metaphlan_hclust_heatmap.py \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
36 --in test-data/merged_community_profile.tabular \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
37 --out test-data/heatmap.svg \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
38 -m 'complete' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
39 -d 'hamming' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
40 -f 'matching' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
41 --minv '0' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
42 --tax_lev 'a' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
43 --sdend_h '0.1' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
44 --fdend_w '0.1' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
45 --cm_h '0.03' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
46 --font_size '7' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
47 --clust_line_w '1' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
48 --perc '90' \
a6c3f4f439f7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff changeset
49 -c 'pink'