Mercurial > repos > iuc > customize_metaphlan_database

diff customize_metaphlan_database.xml @ 2:487da152fb43 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit f1c6f4fe1e572ace84cf9106bc253603f55aac55"
author iuc
date Mon, 14 Jun 2021 12:48:54 +0000
parents a6c3f4f439f7
children a755466eb47c
line wrap: on
line diff
--- a/customize_metaphlan_database.xml	Mon May 17 20:09:28 2021 +0000
+++ b/customize_metaphlan_database.xml	Mon Jun 14 12:48:54 2021 +0000
@@ -191,10 +191,14 @@
                 </repeat>
             </conditional>
             <output name="out_fasta" file="test-db.fasta" compare="sim_size">
+              <assert_contents>   
                 <has_text text="13076__A0A2I1PE66__CYJ72_10760" />
+              </assert_contents>
             </output>
             <output name="out_json" file="test-db.json" compare="sim_size">
+              <assert_contents>
                 <has_text text="13076__A0A2I1PE66__CYJ72_10760" />
+              </assert_contents>
             </output>
         </test>
         <test expect_num_outputs="2">
@@ -205,10 +209,14 @@
                 <param name="markers" value="marker.txt"/>
             </conditional>
             <output name="out_fasta" file="test-db-without-one-marker.fasta" compare="sim_size">
+              <assert_contents>
                 <not_has_text text="13076__A0A2I1PE66__CYJ72_10760" />
+              </assert_contents>
             </output>
             <output name="out_json" file="test-db-without-one-marker.json" compare="sim_size">
+              <assert_contents>
                 <not_has_text text="13076__A0A2I1PE66__CYJ72_10760" />
+              </assert_contents>
             </output>
         </test>
         <test expect_num_outputs="2">
@@ -219,10 +227,14 @@
                 <param name="markers" value="marker.txt"/>
             </conditional>
             <output name="out_fasta" file="test-db-with-one-marker.fasta" compare="sim_size">
+              <assert_contents>
                 <has_text text="13076__A0A2I1PE66__CYJ72_10760" />
+              </assert_contents>
             </output>
             <output name="out_json" file="test-db-with-one-marker.json" compare="sim_size">
+              <assert_contents>
                 <has_text text="13076__A0A2I1PE66__CYJ72_10760" />
+              </assert_contents> 
             </output>
         </test>
     </tests>