Mercurial > repos > iuc > cwpair2
comparison cwpair2.xml @ 6:c4b926c9831c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cwpair2 commit ca66053a0d915edba3d7f1d4ce014718e7f4f0f2
| author | iuc |
|---|---|
| date | Thu, 02 May 2019 08:30:22 -0400 |
| parents | 71188f3f4b76 |
| children |
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| 5:71188f3f4b76 | 6:c4b926c9831c |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool id="cwpair2" name="CWPair2" version="@WRAPPER_VERSION@.0"> | 2 <tool id="cwpair2" name="CWPair2" version="1.1.1"> |
| 3 <description>find matched pairs and unmatched orphans</description> | 3 <description>find matched pairs and unmatched orphans</description> |
| 4 <macros> | 4 <macros> |
| 5 <import>cwpair2_macros.xml</import> | 5 <import>cwpair2_macros.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements" /> | 7 <expand macro="requirements" /> |
| 81 <param name="threshold_format" value="relative_threshold" /> | 81 <param name="threshold_format" value="relative_threshold" /> |
| 82 <param name="relative_threshold" value="0.0" /> | 82 <param name="relative_threshold" value="0.0" /> |
| 83 <param name="output_files" value="matched_pair" /> | 83 <param name="output_files" value="matched_pair" /> |
| 84 <output name="statistics_output" file="statistics1.tabular" ftype="tabular" /> | 84 <output name="statistics_output" file="statistics1.tabular" ftype="tabular" /> |
| 85 <output_collection name="MP" type="list"> | 85 <output_collection name="MP" type="list"> |
| 86 <element name="data_MP_closest_f0u25d100_on_data_1.gff" file="closest_mp_output1.gff" ftype="gff" compare="contains"/> | 86 <element name="data_MP_closest_f0u25d100_on_data_1.gff" file="closest_mp_output1.gff" ftype="gff" /> |
| 87 <element name="data_MP_largest_f0u25d100_on_data_1.gff" file="largest_mp_output1.gff" ftype="gff" compare="contains"/> | 87 <element name="data_MP_largest_f0u25d100_on_data_1.gff" file="largest_mp_output1.gff" ftype="gff" /> |
| 88 <element name="data_MP_mode_f0u25d100_on_data_1.gff" file="mode_mp_output1.gff" ftype="gff" compare="contains"/> | 88 <element name="data_MP_mode_f0u25d100_on_data_1.gff" file="mode_mp_output1.gff" ftype="gff" /> |
| 89 </output_collection> | 89 </output_collection> |
| 90 </test> | 90 </test> |
| 91 <test> | 91 <test> |
| 92 <param name="input" value="cwpair2_input1.gff" /> | 92 <param name="input" value="cwpair2_input1.gff" /> |
| 93 <param name="up_distance" value="50" /> | 93 <param name="up_distance" value="50" /> |
| 104 <element name="histogram_F_largest_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" /> | 104 <element name="histogram_F_largest_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" /> |
| 105 <element name="histogram_F_mode_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" /> | 105 <element name="histogram_F_mode_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" /> |
| 106 <element name="histogram_P_mode_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" /> | 106 <element name="histogram_P_mode_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" /> |
| 107 </output_collection> | 107 </output_collection> |
| 108 <output_collection name="D" type="list"> | 108 <output_collection name="D" type="list"> |
| 109 <element name="data_D_closest_f0u50d100_on_data_1.tabular" file="closest_d_output2.tabular" ftype="tabular" compare="contains"/> | 109 <element name="data_D_closest_f0u50d100_on_data_1.tabular" file="closest_d_output2.tabular" ftype="tabular" /> |
| 110 <element name="data_D_largest_f0u50d100_on_data_1.tabular" file="largest_d_output2.tabular" ftype="tabular" compare="contains"/> | 110 <element name="data_D_largest_f0u50d100_on_data_1.tabular" file="largest_d_output2.tabular" ftype="tabular" /> |
| 111 <element name="data_D_mode_f0u50d100_on_data_1.tabular" file="mode_d_output2.tabular" ftype="tabular" compare="contains"/> | 111 <element name="data_D_mode_f0u50d100_on_data_1.tabular" file="mode_d_output2.tabular" ftype="tabular" /> |
| 112 </output_collection> | 112 </output_collection> |
| 113 <output_collection name="O" type="list"> | 113 <output_collection name="O" type="list"> |
| 114 <element name="data_O_closest_f0u50d100_on_data_1.tabular" file="closest_o_output2.tabular" ftype="tabular" compare="contains"/> | 114 <element name="data_O_closest_f0u50d100_on_data_1.tabular" file="closest_o_output2.tabular" ftype="tabular" /> |
| 115 <element name="data_O_largest_f0u50d100_on_data_1.tabular" file="largest_o_output2.tabular" ftype="tabular" compare="contains"/> | 115 <element name="data_O_largest_f0u50d100_on_data_1.tabular" file="largest_o_output2.tabular" ftype="tabular" /> |
| 116 <element name="data_O_mode_f0u50d100_on_data_1.tabular" file="mode_o_output2.tabular" ftype="tabular" compare="contains"/> | 116 <element name="data_O_mode_f0u50d100_on_data_1.tabular" file="mode_o_output2.tabular" ftype="tabular" /> |
| 117 </output_collection> | 117 </output_collection> |
| 118 <output_collection name="MP" type="list"> | 118 <output_collection name="MP" type="list"> |
| 119 <element name="data_MP_closest_f0u50d100_on_data_1.gff" file="closest_mp_output2.gff" ftype="gff" compare="contains"/> | 119 <element name="data_MP_closest_f0u50d100_on_data_1.gff" file="closest_mp_output2.gff" ftype="gff" /> |
| 120 <element name="data_MP_largest_f0u50d100_on_data_1.gff" file="largest_mp_output2.gff" ftype="gff" compare="contains"/> | 120 <element name="data_MP_largest_f0u50d100_on_data_1.gff" file="largest_mp_output2.gff" ftype="gff" /> |
| 121 <element name="data_MP_mode_f0u50d100_on_data_1.gff" file="mode_mp_output2.gff" ftype="gff" compare="contains"/> | 121 <element name="data_MP_mode_f0u50d100_on_data_1.gff" file="mode_mp_output2.gff" ftype="gff" /> |
| 122 </output_collection> | 122 </output_collection> |
| 123 </test> | 123 </test> |
| 124 </tests> | 124 </tests> |
| 125 <help> | 125 <help> |
| 126 **What it does** | 126 **What it does** |