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directory /test-data/ @ 0:ce4aec98949d draft

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file F3D0_S188_L001_R1_001.fastq.gz 26099 -rw-r--r--
file F3D0_S188_L001_R2_001.fastq.gz 35187 -rw-r--r--
file assignTaxonomyAddspecies_F3D0.tab 1911 -rw-r--r--
file assignTaxonomyAddspecies_F3D0_boot.tab 1952 -rw-r--r--
file complexity.pdf 5179 -rw-r--r--
file dada2_species.loc 444 -rw-r--r--
file dada2_taxonomy.loc 470 -rw-r--r--
file dada_F3D0_R1.Rdata 22149 -rw-r--r--
file dada_F3D0_R2.Rdata 20010 -rw-r--r--
file derepFastq_F3D0_R1.Rdata 701598 -rw-r--r--
file derepFastq_F3D0_R2.Rdata 1200868 -rw-r--r--
file filterAndTrim_F3D0.tab 47 -rw-r--r--
file filterAndTrim_F3D0_R1.fq.gz 26064 -rw-r--r--
file filterAndTrim_F3D0_R2.fq.gz 35036 -rw-r--r--
file filterAndTrim_single_F3D0_R1.fq.gz 12109 -rw-r--r--
file filterAndTrim_single_filters_F3D0_R1.fq.gz 4430 -rw-r--r--
file filterAndTrim_single_trimmers_F3D0_R1.fq.gz 4493 -rw-r--r--
file gentest.R 3698 -rw-r--r--
file gentest.sh 314 -rw-r--r--
file learnErrors_F3D0_R1.Rdata 13752 -rw-r--r--
file learnErrors_F3D0_R1.pdf 14015 -rw-r--r--
file learnErrors_F3D0_R2.Rdata 13752 -rw-r--r--
file learnErrors_F3D0_R2.pdf 14015 -rw-r--r--
file makeSequenceTable_F3D0.pdf 4577 -rw-r--r--
file makeSequenceTable_F3D0.tab 1797 -rw-r--r--
file mergePairs_F3D0.Rdata 735 -rw-r--r--
file mergePairs_F3D0_nondefault.Rdata 1399 -rw-r--r--
file qualityProfile.pdf 24836 -rw-r--r--
file reference.fa 220 -rw-r--r--
file reference_species.fa 238 -rw-r--r--
file removeBimeraDenovo_F3D0.tab 1797 -rw-r--r--
file removeBimeraDenovo_F3D0_dada_uniques.tab 4579 -rw-r--r--
file removeBimeraDenovo_F3D0_derep_uniques.tab 584868 -rw-r--r--
file removeBimeraDenovo_F3D0_mergepairs.Rdata 735 -rw-r--r--
file seqCounts_F3D0_dadaF.tab 37 -rw-r--r--
file seqCounts_F3D0_filter.tab 72 -rw-r--r--
file seqCounts_F3D0_merge.tab 39 -rw-r--r--
file seqCounts_F3D0_nochim.tab 21 -rw-r--r--
file seqCounts_F3D0_seqtab.tab 21 -rw-r--r--