diff dada2_filterAndTrim.xml @ 10:00e0347751b1 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit bbbc0e71b1db299a7c7296f25ac7adcccd27fbe3

--- a/dada2_filterAndTrim.xml	Fri May 24 11:41:31 2024 +0000
+++ b/dada2_filterAndTrim.xml	Tue Feb 11 23:27:12 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="dada2_filterAndTrim" name="dada2: filterAndTrim" version="@DADA2_VERSION@+galaxy@WRAPPER_VERSION@" profile="19.09">
+<tool id="dada2_filterAndTrim" name="dada2: filterAndTrim" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>Filter and trim short read data</description>
     <macros>
         <import>macros.xml</import>
@@ -294,8 +294,7 @@
 
 - Truncation of the read length is enforced after trimming of the right end.
 - The long read filter is applied before trimming and the short read filter after trimming.
-- For details on the calculation of the number of expected errors see also https://doi.org/10.1093/bioinformatics/btv401
-
+- For details on the calculation of the number of expected errors see also Calahan et al. 2016
 
 *String present at the start of valid reads* (orient.fwd):
 
@@ -316,4 +315,4 @@
 @HELP_OVERVIEW@
     ]]></help>
     <expand macro="citations"/>
-</tool>
+</tool>
\ No newline at end of file