# HG changeset patch # User iuc # Date 1575586754 18000 # Node ID 777f9846c56d9594e365647b6862bdf48b1dfe90 # Parent cc41546adf5699cb06f113af9770dd976d033dbf "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit a82e4981dac025c909244acd7127c215bdb519a7" diff -r cc41546adf56 -r 777f9846c56d README.md --- a/README.md Fri Nov 08 18:48:06 2019 -0500 +++ b/README.md Thu Dec 05 17:59:14 2019 -0500 @@ -1,15 +1,21 @@ Wrappers for the core functionality of the dada2 package https://benjjneb.github.io/dada2/index.html. +- assignTaxonomyAddspecies - filterAndTrim - learnErrors - dada - mergePairs - makeSequenceTable +- plotComplexity +- plotQualityProfile - removeBimeraDenovo +- seqCounts Installation ============ +A conda release >=4.6 is needed so that the bioconductor-dada2 conda environment can be installed correctly. + The dada2 wrappers can be installed via the toolshed. Since they use datatypes that have been introduced with Galaxy release 19.09 they won't work out of the box for older Galaxy releases. In order to run the tools you may either upgrade Galaxy or execute the following two steps: diff -r cc41546adf56 -r 777f9846c56d macros.xml --- a/macros.xml Fri Nov 08 18:48:06 2019 -0500 +++ b/macros.xml Thu Dec 05 17:59:14 2019 -0500 @@ -8,7 +8,7 @@ 1.12 - 0 + 1