# HG changeset patch
# User iuc
# Date 1766240244 0
# Node ID 88677f452aea3c6f9b41cd9857f7621d174181e1
# Parent  ebd632e95aae660dcb7d6b5be173cd5d28e1d964
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/dada2 commit f65944aa0547c2fbe4b746cf443c85b2a76e9a48

diff -r ebd632e95aae -r 88677f452aea macros.xml
--- a/macros.xml	Tue Feb 11 23:30:34 2025 +0000
+++ b/macros.xml	Sat Dec 20 14:17:24 2025 +0000
@@ -12,9 +12,9 @@
             <xref type="bioconductor">dada2</xref>
         </xrefs>
     </xml>
-    <token name="@PROFILE@">23.2</token>
+    <token name="@PROFILE@">24.2</token>
     <token name="@TOOL_VERSION@">1.34.0</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
 
     <xml name="version_command">
         <version_command><![CDATA[
@@ -80,17 +80,12 @@
     <xml name="fastq_input" token_multiple="" token_collection_type="" token_argument_fwd="" token_argument_rev="">
         <conditional name="paired_cond">
             <param name="paired_select" type="select" label="Paired reads">
-                <option value="paired">paired - in a data set pair</option>
-                <option value="separate">paired - in two separate data sets</option>
+                <option value="paired">paired</option>
                 <option value="single">single</option>
             </param>
             <when value="paired">
                 <param name="reads" argument="@ARGUMENT_FWD@/@ARGUMENT_REV@" type="data_collection" collection_type="@COLLECTION_TYPE@" format="fastq,fastq.gz" label="Paired short read data"/>
             </when>
-            <when value="separate">
-                <param name="reads" argument="@ARGUMENT_FWD@" type="data" format="fastq,fastq.gz" multiple="@MULTIPLE@" label="Forward read data"/>
-                <param name="sdaer" argument="@ARGUMENT_REV@" type="data" format="fastq,fastq.gz" multiple="@MULTIPLE@" label="Reverse read data"/>
-            </when>
             <when value="single">
                 <param name="reads" argument="@ARGUMENT_FWD@" type="data" format="fastq,fastq.gz" multiple="@MULTIPLE@" label="Short read data"/>
             </when>