Mercurial > repos > iuc > dada2_mergepairs
comparison dada2_mergePairs.xml @ 2:69900ffd3b8e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit f2a33fe115fef9d711112b53136cf7619f1b19be"
author | iuc |
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date | Mon, 16 Mar 2020 08:22:08 -0400 |
parents | b1e55c248f17 |
children | 84743da21318 |
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1:b1e55c248f17 | 2:69900ffd3b8e |
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38 <outputs> | 38 <outputs> |
39 <data name="merged" format="dada2_mergepairs" label="${tool.name} on ${on_string}"/> | 39 <data name="merged" format="dada2_mergepairs" label="${tool.name} on ${on_string}"/> |
40 </outputs> | 40 </outputs> |
41 <tests> | 41 <tests> |
42 <test> | 42 <test> |
43 <param name="dadaF" ftype="dada2_dada" value="dada_F3D0_R1.Rdata"/> | 43 <param name="dadaF" ftype="dada2_dada" value="dada_F3D0_S188_L001_R1.Rdata"/> |
44 <param name="derepF" ftype="fastq.gz" value="filterAndTrim_F3D0_R1.fq.gz"/> | 44 <param name="derepF" ftype="fastq.gz" value="filterAndTrim_F3D0_R1.fq.gz"/> |
45 <param name="dadaR" ftype="dada2_dada" value="dada_F3D0_R2.Rdata"/> | 45 <param name="dadaR" ftype="dada2_dada" value="dada_F3D0_S188_L001_R2.Rdata"/> |
46 <param name="derepR" ftype="fastq.gz" value="filterAndTrim_F3D0_R2.fq.gz"/> | 46 <param name="derepR" ftype="fastq.gz" value="filterAndTrim_F3D0_R2.fq.gz"/> |
47 <output name="merged" value="mergePairs_F3D0.Rdata" ftype="dada2_mergepairs" compare="sim_size" delta="400" /> | 47 <output name="merged" value="mergePairs_F3D0_S188_L001.Rdata" ftype="dada2_mergepairs" compare="sim_size" delta="400" /> |
48 </test> | 48 </test> |
49 <!-- test non-default options --> | 49 <!-- test non-default options --> |
50 <test> | 50 <test> |
51 <param name="dadaF" ftype="dada2_dada" value="dada_F3D0_R1.Rdata"/> | 51 <param name="dadaF" ftype="dada2_dada" value="dada_F3D0_S188_L001_R1.Rdata"/> |
52 <param name="derepF" ftype="fastq.gz" value="filterAndTrim_F3D0_R1.fq.gz"/> | 52 <param name="derepF" ftype="fastq.gz" value="filterAndTrim_F3D0_R1.fq.gz"/> |
53 <param name="dadaR" ftype="dada2_dada" value="dada_F3D0_R2.Rdata"/> | 53 <param name="dadaR" ftype="dada2_dada" value="dada_F3D0_S188_L001_R2.Rdata"/> |
54 <param name="derepR" ftype="fastq.gz" value="filterAndTrim_F3D0_R2.fq.gz"/> | 54 <param name="derepR" ftype="fastq.gz" value="filterAndTrim_F3D0_R2.fq.gz"/> |
55 <output name="merged" value="mergePairs_F3D0_nondefault.Rdata" ftype="dada2_mergepairs" compare="sim_size" delta="700"/> | 55 <output name="merged" value="mergePairs_F3D0_S188_L001_nondefault.Rdata" ftype="dada2_mergepairs" compare="sim_size" delta="700"/> |
56 <param name="minOverlap" value="8" /> | 56 <param name="minOverlap" value="8" /> |
57 <param name="maxMismatch" value="1"/> | 57 <param name="maxMismatch" value="1"/> |
58 <param name="justConcatenate" value="TRUE" /> | 58 <param name="justConcatenate" value="TRUE" /> |
59 <param name="trimOverhang" value="TRUE" /> | 59 <param name="trimOverhang" value="TRUE" /> |
60 </test> | 60 </test> |