Mercurial > repos > iuc > dada2_plotcomplexity
comparison dada2_plotComplexity.xml @ 2:1728e5ee871a draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit f2a33fe115fef9d711112b53136cf7619f1b19be"
| author | iuc |
|---|---|
| date | Mon, 16 Mar 2020 08:34:59 -0400 |
| parents | ab2030f217a9 |
| children | 555ccac8a4c5 |
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| 1:498d57610fcd | 2:1728e5ee871a |
|---|---|
| 117 <collection type="paired"> | 117 <collection type="paired"> |
| 118 <element name="forward" value="F3D0_S188_L001_R1_001.fastq.gz" ftype="fastqsanger.gz"/> | 118 <element name="forward" value="F3D0_S188_L001_R1_001.fastq.gz" ftype="fastqsanger.gz"/> |
| 119 <element name="reverse" value="F3D0_S188_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/> | 119 <element name="reverse" value="F3D0_S188_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/> |
| 120 </collection> | 120 </collection> |
| 121 </element> | 121 </element> |
| 122 <element name="F3D141_S207_L001"> | |
| 123 <collection type="paired"> | |
| 124 <element name="forward" value="F3D141_S207_L001_R1_001.fastq.gz" ftype="fastqsanger.gz"/> | |
| 125 <element name="reverse" value="F3D141_S207_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/> | |
| 126 </collection> | |
| 127 </element> | |
| 122 </collection> | 128 </collection> |
| 123 </param> | 129 </param> |
| 124 <param name="batch_cond|aggregate" value="FALSE"/> | 130 <param name="batch_cond|aggregate" value="FALSE"/> |
| 125 <output name="output_fwd" value="complexity.pdf" ftype="pdf" compare="sim_size" delta="200"/> | 131 <output name="output_fwd" value="complexity_fwd.pdf" ftype="pdf" compare="sim_size" delta="200"/> |
| 126 <output name="output_rev" value="complexity.pdf" ftype="pdf" compare="sim_size" delta="200"/> | 132 <output name="output_rev" value="complexity_rev.pdf" ftype="pdf" compare="sim_size" delta="200"/> |
| 127 </test> | 133 </test> |
| 128 <!-- paired-separate joint, no-aggregate (sim_size because element ids differ) --> | 134 <!-- paired-separate joint, no-aggregate (sim_size because element ids differ) --> |
| 129 <test expect_num_outputs="2"> | 135 <test expect_num_outputs="2"> |
| 130 <param name="batch_cond|batch_select" value="joint"/> | 136 <param name="batch_cond|batch_select" value="joint"/> |
| 131 <param name="batch_cond|paired_cond|paired_select" value="separate"/> | 137 <param name="batch_cond|paired_cond|paired_select" value="separate"/> |
| 132 <param name="batch_cond|paired_cond|reads" value="F3D0_S188_L001_R1_001.fastq.gz" ftype="fastqsanger.gz"/> | 138 <param name="batch_cond|paired_cond|reads" value="F3D0_S188_L001_R1_001.fastq.gz,F3D141_S207_L001_R1_001.fastq.gz" ftype="fastqsanger.gz"/> |
| 133 <param name="batch_cond|paired_cond|sdaer" value="F3D0_S188_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/> | 139 <param name="batch_cond|paired_cond|sdaer" value="F3D0_S188_L001_R2_001.fastq.gz,F3D141_S207_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/> |
| 134 <param name="batch_cond|aggregate" value="FALSE"/> | 140 <param name="batch_cond|aggregate" value="FALSE"/> |
| 135 <output name="output_fwd" value="complexity.pdf" ftype="pdf" compare="sim_size" delta="200"/> | 141 <output name="output_fwd" value="complexity_fwd.pdf" ftype="pdf" compare="sim_size" delta="200"/> |
| 136 <output name="output_rev" value="complexity.pdf" ftype="pdf" compare="sim_size" delta="200"/> | 142 <output name="output_rev" value="complexity_rev.pdf" ftype="pdf" compare="sim_size" delta="200"/> |
| 137 </test> | 143 </test> |
| 138 <!-- single, non-batch, aggregate, small sample --> | 144 <!-- single, non-batch, aggregate, small sample --> |
| 139 <test expect_num_outputs="1"> | 145 <test expect_num_outputs="1"> |
| 140 <param name="batch_cond|batch_select" value="joint"/> | 146 <param name="batch_cond|batch_select" value="joint"/> |
| 141 <param name="batch_cond|paired_cond|paired_select" value="single"/> | 147 <param name="batch_cond|paired_cond|paired_select" value="single"/> |
| 142 <param name="batch_cond|paired_cond|reads" value="F3D0_S188_L001_R1_001.fastq.gz,F3D0_S188_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/> | 148 <param name="batch_cond|paired_cond|reads" value="F3D0_S188_L001_R1_001.fastq.gz,F3D0_S188_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/> |
| 143 <param name="n" value="10000"/> | 149 <param name="n" value="10000"/> |
| 144 <param name="batch_cond|aggregate" value="TRUE"/> | 150 <param name="batch_cond|aggregate" value="TRUE"/> |
| 145 <output name="output" value="complexity.pdf" ftype="pdf" compare="sim_size" delta="200"/> | 151 <output name="output" value="complexity_fwd.pdf" ftype="pdf" compare="sim_size" delta="900"/> |
| 146 </test> | 152 </test> |
| 147 | 153 |
| 148 <!-- paired, batch --> | 154 <!-- paired, batch --> |
| 149 <test expect_num_outputs="2"> | 155 <test expect_num_outputs="2"> |
| 150 <param name="batch_cond|batch_select" value="batch"/> | 156 <param name="batch_cond|batch_select" value="batch"/> |