comparison macros.xml @ 11:224abe7c80ed draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/dada2 commit f65944aa0547c2fbe4b746cf443c85b2a76e9a48

10:6f06d501b7e6

        <xrefs>
            <xref type="bio.tools">dada2</xref>
            <xref type="bioconductor">dada2</xref>
        </xrefs>
    </xml>
    <token name="@PROFILE@">23.2</token>
    <token name="@TOOL_VERSION@">1.34.0</token>
    <token name="@VERSION_SUFFIX@">0</token>

    <xml name="version_command">
        <version_command><![CDATA[
echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
        ]]></version_command>

    ]]></token>

    <xml name="fastq_input" token_multiple="" token_collection_type="" token_argument_fwd="" token_argument_rev="">
        <conditional name="paired_cond">
            <param name="paired_select" type="select" label="Paired reads">
                <option value="paired">paired - in a data set pair</option>
                <option value="separate">paired - in two separate data sets</option>
                <option value="single">single</option>
            </param>
            <when value="paired">
                <param name="reads" argument="@ARGUMENT_FWD@/@ARGUMENT_REV@" type="data_collection" collection_type="@COLLECTION_TYPE@" format="fastq,fastq.gz" label="Paired short read data"/>
            </when>
            <when value="separate">
                <param name="reads" argument="@ARGUMENT_FWD@" type="data" format="fastq,fastq.gz" multiple="@MULTIPLE@" label="Forward read data"/>
                <param name="sdaer" argument="@ARGUMENT_REV@" type="data" format="fastq,fastq.gz" multiple="@MULTIPLE@" label="Reverse read data"/>
            </when>
            <when value="single">
                <param name="reads" argument="@ARGUMENT_FWD@" type="data" format="fastq,fastq.gz" multiple="@MULTIPLE@" label="Short read data"/>
            </when>
        </conditional>

11:224abe7c80ed

        <xrefs>
            <xref type="bio.tools">dada2</xref>
            <xref type="bioconductor">dada2</xref>
        </xrefs>
    </xml>
    <token name="@PROFILE@">24.2</token>
    <token name="@TOOL_VERSION@">1.34.0</token>
    <token name="@VERSION_SUFFIX@">1</token>

    <xml name="version_command">
        <version_command><![CDATA[
echo $(R --version | grep version | grep -v GNU)", dada2 version" $(R --vanilla --slave -e "library(dada2); cat(sessionInfo()\$otherPkgs\$dada2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
        ]]></version_command>

    ]]></token>

    <xml name="fastq_input" token_multiple="" token_collection_type="" token_argument_fwd="" token_argument_rev="">
        <conditional name="paired_cond">
            <param name="paired_select" type="select" label="Paired reads">
                <option value="paired">paired</option>
                <option value="single">single</option>
            </param>
            <when value="paired">
                <param name="reads" argument="@ARGUMENT_FWD@/@ARGUMENT_REV@" type="data_collection" collection_type="@COLLECTION_TYPE@" format="fastq,fastq.gz" label="Paired short read data"/>
            </when>
            <when value="single">
                <param name="reads" argument="@ARGUMENT_FWD@" type="data" format="fastq,fastq.gz" multiple="@MULTIPLE@" label="Short read data"/>
            </when>
        </conditional>