Mercurial > repos > iuc > dada2_plotqualityprofile

diff dada2_plotQualityProfile.xml @ 2:2a90d2fd3336 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit f2a33fe115fef9d711112b53136cf7619f1b19be"
author iuc
date Mon, 16 Mar 2020 08:41:08 -0400
parents 371afe17d247
children a58e4a43f49c
line wrap: on
line diff
--- a/dada2_plotQualityProfile.xml	Thu Dec 05 18:02:38 2019 -0500
+++ b/dada2_plotQualityProfile.xml	Mon Mar 16 08:41:08 2020 -0400
@@ -109,21 +109,27 @@
                             <element name="reverse" value="F3D0_S188_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/>
                          </collection>
                     </element>
+                    <element name="F3D141_S207_L001">
+                        <collection type="paired">
+                            <element name="forward" value="F3D141_S207_L001_R1_001.fastq.gz" ftype="fastqsanger.gz"/>
+                            <element name="reverse" value="F3D141_S207_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/>
+                         </collection>
+                    </element>
                 </collection>
             </param>
             <param name="batch_cond|aggregate" value="FALSE"/>
-            <output name="output_fwd" value="qualityProfile.pdf" ftype="pdf" compare="sim_size" delta="15000"/>
-            <output name="output_rev" value="qualityProfile.pdf" ftype="pdf" compare="sim_size" delta="15000"/>
+            <output name="output_fwd" value="qualityProfile_fwd.pdf" ftype="pdf" compare="sim_size" delta="15000"/>
+            <output name="output_rev" value="qualityProfile_rev.pdf" ftype="pdf" compare="sim_size" delta="15000"/>
         </test>
         <!-- paired-separate joint, no-aggregate (sim_size because element ids differ) -->
         <test expect_num_outputs="2">
             <param name="batch_cond|batch_select" value="joint"/>
             <param name="batch_cond|paired_cond|paired_select" value="separate"/>
-            <param name="batch_cond|paired_cond|reads" value="F3D0_S188_L001_R1_001.fastq.gz" ftype="fastqsanger.gz"/>
-            <param name="batch_cond|paired_cond|sdaer" value="F3D0_S188_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/>
+            <param name="batch_cond|paired_cond|reads" value="F3D0_S188_L001_R1_001.fastq.gz,F3D141_S207_L001_R1_001.fastq.gz" ftype="fastqsanger.gz"/>
+            <param name="batch_cond|paired_cond|sdaer" value="F3D0_S188_L001_R2_001.fastq.gz,F3D141_S207_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/>
             <param name="batch_cond|aggregate" value="FALSE"/>
-            <output name="output_fwd" value="qualityProfile.pdf" ftype="pdf" compare="sim_size" delta="15000"/>
-            <output name="output_rev" value="qualityProfile.pdf" ftype="pdf" compare="sim_size" delta="15000"/>
+            <output name="output_fwd" value="qualityProfile_fwd.pdf" ftype="pdf" compare="sim_size" delta="15000"/>
+            <output name="output_rev" value="qualityProfile_fwd.pdf" ftype="pdf" compare="sim_size" delta="15000"/>
         </test>
         <!-- single, non-batch, aggregate, small sample -->
         <test expect_num_outputs="1">
@@ -132,7 +138,7 @@
             <param name="batch_cond|paired_cond|reads" value="F3D0_S188_L001_R1_001.fastq.gz,F3D0_S188_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/>
             <param name="n" value="10000"/>
             <param name="batch_cond|aggregate" value="TRUE"/>
-            <output name="output" value="qualityProfile.pdf" ftype="pdf" compare="sim_size" delta="15000"/>
+            <output name="output" value="qualityProfile_fwd.pdf" ftype="pdf" compare="sim_size" delta="16000"/>
         </test>
 
         <!-- paired, batch -->