# HG changeset patch # User iuc # Date 1575586958 18000 # Node ID fa11922f3d91667aab77b53991849a92451a402c # Parent 371afe17d2477db5336a5e8a1f7ce3f475cc3d6f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit a82e4981dac025c909244acd7127c215bdb519a7" diff -r 371afe17d247 -r fa11922f3d91 README.md --- a/README.md Fri Nov 08 18:52:17 2019 -0500 +++ b/README.md Thu Dec 05 18:02:38 2019 -0500 @@ -1,15 +1,21 @@ Wrappers for the core functionality of the dada2 package https://benjjneb.github.io/dada2/index.html. +- assignTaxonomyAddspecies - filterAndTrim - learnErrors - dada - mergePairs - makeSequenceTable +- plotComplexity +- plotQualityProfile - removeBimeraDenovo +- seqCounts Installation ============ +A conda release >=4.6 is needed so that the bioconductor-dada2 conda environment can be installed correctly. + The dada2 wrappers can be installed via the toolshed. Since they use datatypes that have been introduced with Galaxy release 19.09 they won't work out of the box for older Galaxy releases. In order to run the tools you may either upgrade Galaxy or execute the following two steps: diff -r 371afe17d247 -r fa11922f3d91 macros.xml --- a/macros.xml Fri Nov 08 18:52:17 2019 -0500 +++ b/macros.xml Thu Dec 05 18:02:38 2019 -0500 @@ -8,7 +8,7 @@ 1.12 - 0 + 1